You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Lesson IV - Comparative Genomics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1668

    views

    1167

    downloads

    0

    comments

    0

    adaptations

    QUBES: Building a community to promote undergraduate quantitative biology education
    QUBES is designed to improve communication among educators, assist faculty in understanding and implementing novel content and teaching strategies in their classrooms, and create an academic reward...

    Keywords: QUBES

    1484

    views

    450

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    Keywords: bioinformaticsgenomicscodingJupyter notebookcommand lineCyVersescriptingnext generation sequencing analysis

    2845

    views

    534

    downloads

    2

    comments

    0

    adaptations

    Maria vs Malaria
    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria.

    Keywords: bioinformaticsmolecular visualizationstructure-functionuniprotProtein Data BankMolecular Case StudyMolecular CaseNet

    478

    views

    303

    downloads

    0

    comments

    1

    adaptations

    2014-Allen-EtAl-Perturbations in Epidemiological Models -When zombies attack we can survive
    In this paper, we investigate the existence of stability-changing bifurcations in epidemiological models used to study the spread of zombiism through a human population.

    Keywords: epidemiologydynamical systemszombiesbifurcationperturbation

    164

    views

    64

    downloads

    0

    comments

    0

    adaptations

    1999-Meyer-Ausubel-Carrying Capacity-A Model with Logistically Varying Limits
    This paper extends the logistic equation to simple growth model with a logistically increasing carrying capacity. This is applied to human population situations in several countries with fits to data.

    Keywords: population dynamicsparameter estimationlimited growthgrowthlogisitic

    136

    views

    51

    downloads

    0

    comments

    0

    adaptations

    Human Evolution for Secondary and College Students
    This module is made up of four concepts. The goal of the first concept is to elicit an understanding of primate relatedness, phylogeny, and how specific characteristics are beneficial for life in...

    Keywords: fossilsprimatesevolutionary biologyhominin evolutionhuman biologyGeneral Biology

    809

    views

    575

    downloads

    0

    comments

    0

    adaptations

    The impacts of wildfire smoke on human health with Dr. Colleen Reid
    In this discussion, Dr. Colleen Reid discusses her field of Health Geography, or how environmental exposures impact population health. A detailed breakdown of the pollutant composition of...
    690

    views

    141

    downloads

    0

    comments

    0

    adaptations

    Louse and Human Coevolution
    This module examines the complicated co-evolution of Lice, Humans, and Great Apes

    Keywords: phylogeneticsBiodiversityparasitesCoevolutionhuman evolution

    1914

    views

    1935

    downloads

    0

    comments

    0

    adaptations

    Investigating human impacts on stream ecology: locally and nationally
    How does nutrient pollution impact stream ecosystems locally and nationally?
    1221

    views

    1388

    downloads

    0

    comments

    0

    adaptations

    Investigating human impacts on stream ecology: Intro to R
    This resource uses the Human Impact on Stream Ecology data set, background and questions and provides students an very general introduction to using R. Students perform basic summary statistics and...

    Keywords: graphingdata visualizationR programming languagedescriptive statisticsundergraduate environmental science

    1507

    views

    1073

    downloads

    0

    comments

    0

    adaptations

    Regulation of Sex Determination
    This activity accompanies the HHMI BioInteractive module Sex Verification of Athletes (​https://www.hhmi.org/biointeractive/testing-athletes​). It provides students with exercises to explore the...
    1600

    views

    6675

    downloads

    0

    comments

    0

    adaptations

    Exploration of the Human Genome by Investigation of Personalized SNPs
    To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...

    Keywords: bioinformaticsNIBLSECourseSourcegenomic wide association studiesUCSC genome browsersingle nucleotide polymorphism

    1331

    views

    339

    downloads

    0

    comments

    0

    adaptations

    Introduction to Mathematical Modeling in Biotechnology, Cell Biology, and Physiology
    The course is a mathematical and computational exploration of five diverse areas of biology: human locomotion, gene sequence analysis, signal transduction pathways involved in cancer,...

    Keywords: mathematical modelingcoursehuman locomotionneuroanatomyneurophysiologysignal transductiongene sequence analysis

    999

    views

    310

    downloads

    0

    comments

    0

    adaptations

    Environmental Justice and Freshwater Resources
    This module enables students to identify the freshwater components of the hydrologic cycle and connect them to the basic need of all human beings for equal access to clean freshwater.

    Keywords: sustainabilityenvironmental scienceglobal changeexamwater resourcesenvironmental sociologyResources @ InTeGrate

    1653

    views

    292

    downloads

    0

    comments

    0

    adaptations

    Discovery Poster Project
    Engaging in undergraduate research can be exciting yet intimidating to first-year students at large research universities. For first-generation college students, whose pre-college exposure to...

    Keywords: researchprimary literaturePostercore concepts

    1925

    views

    316

    downloads

    0

    comments

    0

    adaptations

    Exploring Microbial Diversity: An Interactive In-Class Assignment for Biology and Microbiology Courses
    This interactive assignment engages students in a hands-on exploration of microbial diversity and the importance of microbes in ecosystems. Designed for General Biology II and Introduction to...

    Keywords: Microbiology EducationMicrobial DiversitymicrobiologyEcological Society of Americaecology educationresearch-based classroom instruction4DEE Framework

    329

    views

    143

    downloads

    0

    comments

    0

    adaptations

    How Many Squirrels Are in the Shrubs? A Lesson Plan for Comparing Methods for Population Estimation
    Estimating the population sizes of animals is a key skill for any student interested in ecology, conservation, or management. However, counting animals in natural habitats is difficult, and the...

    Keywords: population ecologywildlife managementpopulation estimationsciuridaeSquirrel-Net

    3439

    views

    486

    downloads

    0

    comments

    0

    adaptations

    COVID-19: Molecular Basis of Infection-ADAPTATION
    This case was written in Spring 2020 during the COVID-19 pandemic. It focuses on understanding the structure and interaction of the SARS-Cov-2 viral spike protein that facilitates infection in...

    Keywords: infectionvaccinemolecular visualization and analysisCOVID19PDBSARS-CoVMolecular Case Study

    1264

    views

    1712

    downloads

    0

    comments

    0

    adaptations

    3-110-MilitarySpringMassApplication-ModelingScenario
    The is a collection of different scenarios for the shock system of a trailer. In each scenario, students will transform the shock system of a trailer into a second-order differential equation,...

    Keywords: dampingresonancebeatsspring-mass systemLaplace TransfomDirac Delta function

    212

    views

    156

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search