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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    UNR Bioinformatics Videos
    Two videos developed by Pedro Miura about bioinformatics at UNR

    Keywords: videosbioinformaticsgenomicsyoutube

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    Northern Processing
    Using photoshop and illustrator from tif file to make a figure

    Keywords: videosbioinformaticsgenomicsnorthern processingphotoshopillustrator

    1037

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    208

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    Aging and Circular RNAs
    A science FIT seminar presented to incoming freshmen at UNR

    Keywords: videosbioinformaticsRNAaginggenomicsyoutubecircular rna

    1144

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    254

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    Using Jetstream for Bioinformatics
    A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).

    Keywords: videosbioinformaticsgenomicsyoutubescreen castjetstream

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    Video Tutorials for Computational Genomics
    YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.

    Keywords: videosbioinformaticsgenomicsfmnyoutube

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    NCBI Overview
    An overview of some of the databases within NCBI and how to get FASTA sequences.

    Keywords: videosbioinformaticsFASTAgenomicsNCBIyoutube

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    195

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    UniProt
    Brief description of UniProt and its databases and features

    Keywords: videosbioinformaticsgenomicsyoutubeuniprot

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    212

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    GSEAtheory
    Brief introduction to how gene set enrichment analysis works.

    Keywords: videosbioinformaticsgenomicsyoutubegsea

    1306

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    245

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    What is bioinformatics?
    Short description of what bioinformatics is, it's potential applications, and what it is not.

    Keywords: videosbioinformaticsgenomicsintroductionyoutube

    1063

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    227

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    Survey Findings: Exploring Open Education LC
    Survey findings for the learning community (LC), Exploring Open Education Practices and Pedagogy (Spring 2022), facilitated by Drs. Carlos Goller (North Carolina State University) and Melanie...

    Keywords: evaluation

    318

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    68

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    Open Science and Education Practices Ontology
    Definitions and references for the Open Science and Education Practices tagging ontology
    1017

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    Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes
    Technologies like next-generation sequencing, proteomics, and high-throughput phenotyping have transformed the way we do biology. There is a continued need for scientists with computational skills...

    Keywords: computationpythonJupyter notebookFunctionscentral dogmaDictionaries

    1043

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    131

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    The Edge Effect
    This module has students venturing outdoors to take a 50m transect and collect abundance data on plants utilizing quadrats in both edge and interior environment. Mathematically the goals of this...

    Keywords: statisticsecologydata analysisExcelintroductory biologygraphingp-valuest-testsQuantitative reasoninghypothesis testingsample sizestatistical testsinterdisciplinarystatistical analysisCommunity Ecologyspecies diversityvariationdiversity indexvinterpret dataNIQBShannon diversity indexC3. Statistical AnalysisC6. Quantitative Languageedge effect

    471

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    316

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    2016-Spayd-Puckett- A Three-Fold Approach to the Heat Equation - Data Modeling Numerics
    This article describes our modeling approach to teaching the one-dimensional heat (diffusion) equation in a one-semester undergraduate partial differential equations course.

    Keywords: separation of variablesexperimentheat equationLab Equipmentcollect data

    117

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    51

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    Implementing an online module on microbe-plant interactions in the context of ecological disturbance for Microbiology and Biochemistry courses in India
    This module explores tropical forest gap dynamics and helps students develop hypotheses about climate-related changes in plant-microbial interactions and was implemented in Microbiology and...

    Keywords: data analysisscientific methoddata interpretationdisturbance ecologyexperiential learningCarbon sequestration in tropical rainforestPlant Microbial interactionsCanopy GapUndergraduate MicrobiologyNational Education Policy 2020

    436

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    95

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    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    HITS brings together interdisciplinary groups of HT researchers and instructors to produce authentic HT case studies that can be implemented in a variety of courses, allowing students to analyze...

    Keywords: case studieshigh-throughputHITS

    3069

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    632

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    Characterizing the Quantitative Biology Curricula from Institutions Across the United States
    Undergraduate research poster presented at the Undergraduate Research Symposium at the University of Pittsburgh in 2015.

    Keywords: Mathematical Biologycurriculumundergraduate researchinterdisciplinaryPresentation

    1550

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    246

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    For a Racially-Just, Inclusive, Open, STEM education: The RIOS Institute imagines an Open Education as the radical idea that education should be affordable, accessible, equitable, inclusive, and relevant to everyone
    As we engage in Open STEM Education, “Open for Whom?” becomes an increasingly urgent question. Why should we invest in an education that is free, if it does not attend to the inclusion of...

    Keywords: social justiceriosNABT 2022

    1956

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    126

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    0

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    QUBES: An education gateway for accelerating undergraduate biology education reform
    Poster about QUBES as an education gateway presented at the 2020 Partners@QUBES Leadership Summit.

    Keywords: cyberinfrastructureeducation gateway

    1331

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    323

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    2015 SMB Minisymposium: Topics in Biomathematics Education
    Collection of presentations given at the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: SMB

    929

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    51

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