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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Learn Biological Sciences and Mathematics through cellular respiration, photosynthesis and primary productivity.
    Photosynthesis is a process by which plants synthesize glucose and oxygen in presence of sunlight through light dependent reactions by utilization of sunlight, water to synthesize oxygen, ATP and...

    Keywords: mathematicssimulationThe Analysis of Biological DataMetabolic Pathwaysprocess of sciencephotosynthesisqbccBiological ScienceshypothesisCellular Respirationprimary productivity

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    Population Demography in Swirl
    The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

    Keywords: ecologyPopulation statisticslife history curves

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    Avida-ED Experimental Evolution Project
    Outline to a research project based on Avida-ED's digital organisms
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    Exaggerated Traits and Breeding Success in Widowbirds
    Teaching Notes on the Exaggerated Traits and Breeding Success in Widowbirds

    Keywords: Evolutionexperimental designsexual dimorphismsexual selectionNatural SelectionWidowbirdsbirdintrasexual selectionintersexual selectionhandicap hypothesis

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    Ain't No Mountain Pine Enough: A Case Study of How Mountain Pine Beetles are Affecting Ecosystem Processes
    This case study engages students in generating hypotheses and predictions, analyzing and interpreting data, critically evaluating contrasting results in science, and thinking about feedbacks...

    Keywords: population biologycarbon cyclingSpecies-habitat interactions

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    Does Organelle Shape Matter?: Exploring Patterns in Cell Shape and Structure with High-Throughput (HT) Imaging
    Organelle structure has been studied and visualized for decades; however, publicly available databases that use improved high-throughput microscopy of gene-edited cell lines have recently...

    Keywords: modelingcase studymicroscopystructureOrganellesHigh-throughput (HT)Endoplasmic Reticulum (ER)Fluorescent microscopyHuman Cell Biology

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    2014-Vance-Eads-Sensitivity Analysis of a Three-Species Nonlinear Response Omnivory Model with Predator Stage Structure
    We investigate a three-species nonlinear response omnivory model incorporating stage structure in the top predator. The model consists of four coupled ordinary differential equations involving...

    Keywords: stage structuresensitivity analysismortalityomnivoreomnivory modelsearch rates

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    1992-CHF_Bulte-The differential equation of the deflection curve
    This paper presents the derivation and physical meaning of the general fourth-order linear differential equation (with sectionally continuous derivatives) of the deflection curve and its general...

    Keywords: beamdeflectionshear forcebending momentcritical loadnatural frequency

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    1-073-WaterExitBottle-ModelingScenario
    We offer an experiment in which data is collected to ascertain a parameter in the differential equation formulation of Torricelli's Law for water flow out of a cylindrical container.

    Keywords: datawaterflowTorricelli's Lawbottle

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    Ecological Forecasting Repository of Online Educational Resources
    This pdf provides a list of over 100 educational resources related to tools and skills related to ecological forecasting.

    Keywords: statisticsvideosecologymodel buildingmodulespythonecological forecastingonline course materialcode repositoriesonline textbooksbasics of Rdata sourcesdata skillsforecast cycleapplying forecastsdecision science

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    GEA Introductory lesson on RNA-Seq
    This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

    Keywords: data sciencebioinformaticsGenome BrowserRNAseqhigh throughput sequencingmRNAAlignmentNCBI Sequence Read Archive

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    Improving Civic and Scientific Literacy through Scaffolded Thematic Classroom Research Experiences
    Poster on encouraging civic and scientific literacy presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: scientific literacyauthentic researchcivic literacySummer Workshop 2018

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    Characterizing the Quantitative Biology Curricula from Institutions Across the United States
    Undergraduate research poster presented at the Undergraduate Research Symposium at the University of Pittsburgh in 2015.

    Keywords: Mathematical Biologycurriculumundergraduate researchinterdisciplinaryPresentation

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    A Structured Inquiry-Based Module for the Undergraduate Cell Biology Laboratory That Teaches Fundamental Concepts of Cell Differentiation
    Pedagogical research in science education has shown that students effectively learn science by doing science. As a result, there is increased interest in bringing research-like experiences into the...

    Keywords: fluorescence microscopygene expressionpolymerase chain reactionCell Structurecell culturewestern blottingdifferentiationreverse transcription

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    Coyote Habituation and a Scientist Spotlight on Dr. Christopher Schell
    Dr. Christopher Schell is an ecologist who uses a variety of techniques to study mammalian carnivores in urban areas. This scientist spotlight uses graphs from his study on parental habituation to...

    Keywords: conservation ecologyanimal behaviorurban ecologyInterpreting GraphsBLACK SCIENTISTS IN STEMcoyotes

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    Mapping New Discoveries: iNaturalist and Biodiversity Data
    Meet Lauren Esposito, the Curator of Arachnology at the California Academy of Sciences. Learn how they use community science to inform new species discovery.

    Keywords: endangered species#iNaturalistBiodiversity data usage

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    GSD QUBES Resource Draft (1)
    This QUBES module is focused towards AP Environmental studies courses. It includes hypothesis testing, transect sampling, Shannon Diversity Index, and scatter plot and bar graph creation in excel.

    Keywords: Community EcologyField researchspidersMicrosoft ExcelShannon diversity index

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    Presence of Vegetation in Relation to Slope in Yosemite Valley, California
    Here we examine the relationship between the slope of a terrain and vegetation, measured by NDVI levels. I used satellite data from Yosemite Valley to analyze and test for statistical...

    Keywords: vegetation

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    Basic Statistics
    The students will practice identifying the appropriate basic statistical tests when given a scenario and learn how to run and interpret those statistical tests in R.
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    Optimal Foraging in Swirl
    This lesson centers around the marginal value theorem (MVT, Charnov 1976), which describes how animals should forage in patches. It serves as a pre-lab to teach MVT basics, vectors, ANOVA, and...
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