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    The Edge Effect
    This module has students venturing outdoors to take a 50m transect and collect abundance data on plants utilizing quadrats in both edge and interior environment. Mathematically the goals of this...

    Keywords: statisticsecologydata analysisExcelintroductory biologygraphingp-valuest-testsQuantitative reasoninghypothesis testingsample sizestatistical testsinterdisciplinarystatistical analysisCommunity Ecologyspecies diversityvariationdiversity indexvinterpret dataNIQBShannon diversity indexC3. Statistical AnalysisC6. Quantitative Languageedge effect

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    2020-Cline-EtAl-A Vision for Projects Across the Mathematics Curriculum
    We describe a model that incorporates projects at all stages across the undergraduate mathematics curriculum. Finally, we provide samples of projects that we have used in selected courses.

    Keywords: projectstechnical writinginterdisciplinary skills

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    RAT ATTACK! Population growth
    This module contains exercises focused on the use and interpretation of density independent and density dependent population growth models. Students build logistic and exponential growth models in...

    Keywords: modelingecologyExcelintroductory biologygraphingQuantitative reasoningdata visualizationinterdisciplinaryexponential growthlogistic growthdata managementInterpreting Graphspopulation modelingNIQBC2. Data and GraphsC4. mathematical modelsnonlinear models

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    A class activity on classification
    Within the sciences, we are often talking of phylogenetic classification; hominin and non-human primate phylogenetic trees are often introduced in a course in biological anthropology. Students are...

    Keywords: hands-onphylogeny and classification

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    Hands-On, Hands-Off: The Community College Genomics (ComGen) Course-Based Undergraduate Research Experience
    Science is a process of discovery where failure is inherent and iteration is necessary, yet instructors often teach the scientific process as if it is a controlled, highly supervised, confirmatory...

    Keywords: geneticssequencingDNAbacterium

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    Understanding Restriction Enzyme Digests
    Prior to submitting genomic DNA for sequencing, SEA students perform a restriction endonuclease digest with several enzymes, which provides a fast and cost-effective way of quickly screening...
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    Dilution and Pipetting Lesson Using Food Dyes
    In this lesson students learn how to use micropipettors to accurately measure small volumes of liquids and perform dilutions using food dyes. Students dilute four food dyes at 10X concentration to...

    Keywords: dilutionCalculationLab SkillsMicropipetting

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    Ecology of Infectious Disease: Data Mining the National Notifiable Diseases Surveillance System (NNDSS) for Ecological Patterns
    How to use publicly available infection case data to teach ecology and evolution of human infectious diseases.

    Keywords: Evolutionecologyinfectious diseasehumansjigsawsmall group workEvolutionary medicinedata explorationCDCNNDSS

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    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
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    Teaching introductory bioinformatics with Jupyter notebook-based active learning
    Presentation on teaching introductory bioinformatics with Jupyter notebook-based active learning at the 2019 Great Lakes Bioinformatics Conference

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Agent-Based Modeling Course Materials
    Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.

    Keywords: agent-based modelingindividual-based modelingcourse materials

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    MathBench: Evolved Immunity for Introductory Environmental Science
    The Evolved Immunity module was the focal module for this lesson. Evolved Immunity was chosen because this module includes content and quantitative elements from a range of lab and lecture topics...
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    Outside the Norm: Using Public Ecology Database Information to Teach Biostatistics
    Biology students’ understanding of statistics is incomplete due to poor integration of these two disciplines. In some cases, students fail to learn statistics at the undergraduate level due...

    Keywords: biostatisticshypothesis testingexperimental design

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    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

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    Teaching Cell Structures through Games
    As the basic unit of life, cells are a foundational concept for all of biology. Before students can appreciate how eukaryotic cells function either in isolation or in higher order and multicellular...

    Keywords: Cell Structurecell organellesTransmembrane Transport

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    Small Organisms with Big Consequences: Understanding the Microbial World Around Us
    Creating a hands-on lab that conveys important information while simultaneously allowing for student autonomy can be difficult. This is particularly true for the field of microbiology, in which...

    Keywords: disease transmissionmicrobiologymicrobiomeliterature reviewPeer reviewPathogensHealth and WellnessThe Scientific Method

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    Application of a Bacterial Experimental Evolution System to Visualize and Teach Evolution in Action: A Course-Based Undergraduate Research Experience
    Concepts of evolution are typically taught through examples of extremely long timescales, which do not always resonate broadly. Here, we describe a course-based undergraduate research experience...

    Keywords: EvolutionmutationcompetitionNatural Selectionregulationstructure and functionreproductive fitnessgenotype to phenotypehomologs

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    Preparing Student Study Guides through Peer Collaboration in the Technological Era
    Incorporating active learning exercises into large lecture courses is particularly challenging, especially when it comes to examination preparation materials. Traditionally, study guides are used...

    Keywords: active learningDiscussionStudy Skills

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    The BioTAP Professional Development Model: Expanding Empirical Research on Graduate Student Teaching Professional Development
    The Biology Teaching Assistant Project (BioTAP) provides a year-long mentoring program for practitioners and researchers of Biology Graduate Teaching Assistant Teaching Professional Development...

    Keywords: mentoringstemcommunityUndergraduateteaching professional developmentGraduate Teaching AssistantConfidence in Research Skills

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    Investigating the Function of a Transport Protein: Where is ABCB6 Located in Human Cells?
    One of the challenges of teaching Cell Biology is helping students understand important research methods used to study cells.  The goal of understanding cell biology methods is especially...

    Keywords: ABC transporter familyDifferential centrifugationImmunoblottingImmunofluorescence assayProtein localizationPurifying organellesSDS-PAGE

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