You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

    383

    views

    82

    downloads

    0

    comments

    0

    adaptations

    Investigating Gene Expression and Cell Specialization in Axolotl Embryos
    The process of cell specialization is critical to the formation and function of tissues in animals and plants. Although gene expression, including the regulation of transcription, is taught in most...

    Keywords: developmenttranscriptiongene expressionmodel organismembryo

    1456

    views

    315

    downloads

    0

    comments

    0

    adaptations

    Linking Genotype to Phenotype: The Effect of a Mutation in Gibberellic Acid Production on Plant Germination
    Basic concepts in genetics and plant development are often taught in lecture courses without a lab component. This approach provides students with the content knowledge, but fails to make...

    Keywords: geneticsdevelopmentmutationgerminationplantmodel organismGenotype/PhenotypeHormoneSeed

    2472

    views

    552

    downloads

    0

    comments

    0

    adaptations

    A Structured Inquiry-Based Module for the Undergraduate Cell Biology Laboratory That Teaches Fundamental Concepts of Cell Differentiation
    Pedagogical research in science education has shown that students effectively learn science by doing science. As a result, there is increased interest in bringing research-like experiences into the...

    Keywords: fluorescence microscopygene expressionpolymerase chain reactionCell Structurecell culturewestern blottingdifferentiationreverse transcription

    667

    views

    13

    downloads

    0

    comments

    0

    adaptations

    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

    4100

    views

    404

    downloads

    1

    comments

    0

    adaptations

    Climate Change Connections
    This module is composed of three related activities that introduce students to climate change's complexity from a conceptual standpoint. In the first activity, students work in small groups to...

    Keywords: interdisciplinaryclimate changeconcept mapping

    262

    views

    131

    downloads

    0

    comments

    0

    adaptations

    RAT ATTACK! Population growth
    This module contains exercises focused on the use and interpretation of density independent and density dependent population growth models. Students build logistic and exponential growth models in...

    Keywords: modelingecologyExcelintroductory biologygraphingQuantitative reasoningdata visualizationinterdisciplinaryexponential growthlogistic growthdata managementInterpreting Graphspopulation modelingNIQBC2. Data and GraphsC4. mathematical modelsnonlinear models

    588

    views

    630

    downloads

    0

    comments

    0

    adaptations

    2007-Bellomo-De_Angelis-Delitala-Lecture Notes on Mathematical Modelling in Applied Sciences
    The Lectures Notes correspond to the first part of the course devoted to modelling issues to show how the application of models to describe real world phenomena generates mathematical problems to...

    Keywords: spring massLegendre polynomialsintegro-differential equationskinetic theory

    93

    views

    38

    downloads

    0

    comments

    0

    adaptations

    Interpreting the Pseudocot Phylogeny
    Students use physical characteristics, genetics, and a fossil record of hypothetical flowering plants to develop fundamental phylogenetic tree-building skills.
    526

    views

    580

    downloads

    0

    comments

    0

    adaptations

    Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2
    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    Keywords: phylogeneticsundergraduate educationbioinformaticsNCBICOVID19coronavirusMEGAPyMolvirtual labPDBprotein modelingSARSSARS-CoV

    1163

    views

    581

    downloads

    0

    comments

    0

    adaptations

    SEAS CURE: Exploring Coral Biology Across Scales
    Complex biological concepts (like symbiosis and coral biology) that span multiple scales and cross disciplinary boundaries are often difficult for students to understand. This complexity is...

    Keywords: microscopyAnatomySymbiosisMetabolismbleachinginvertebratedinoflagellate

    3419

    views

    248

    downloads

    0

    comments

    0

    adaptations

    Undergraduates Learn Evolution Through Teaching Kindergartners About Blind Mexican Cavefish
    The development and implementation of a scientific outreach activity comes with a number of challenges. A successful outreach event must match the sophistication of content to the audience, be...

    Keywords: Evolutionecologymorphologysensory biologycave biologycomparative biologyenvironmental differencesregressive lossstructure and function

    1121

    views

    123

    downloads

    0

    comments

    0

    adaptations

    Quantifying Uncertainty and Distinguishing Data Sets in Introductory Physics
    Physics labs are moving increasingly to open-ended experiments where students develop experimental physics skills, rather than verify textbook physics concepts. This sequence of activities sets the...

    Keywords: statisticsMeasurementlaboratoryuncertaintypendulumexperimental skills

    778

    views

    318

    downloads

    0

    comments

    0

    adaptations

    3-071-WirelessTelegraphy-ModelingScenario
    This project has three parts, (1) done at home, (2) and (3) in class. In (1) we recall how to solve second order differential equations with constant coefficients and simple source functions. In...

    Keywords: bRLC circuitresonancebeatscurrentwireless telegraphyLC circuit

    203

    views

    151

    downloads

    0

    comments

    0

    adaptations

    Anti-bias Education Puppet Plays
    Nature provides science content for teacher preparation certification programs and the backdrop for puppet plays used as a springboard for teaching the NAEYC's four goals of Anti-bias...

    Keywords: educationcollectionsmuseumidentitydiversityNatureearly childhoodjusticepuppetplaysnature-basedanti-biasactivism

    1062

    views

    832

    downloads

    0

    comments

    0

    adaptations

    A Short Laboratory Module to Help Infuse Metacognition during an Introductory Course-based Research Experience
    A core competency identified in Vision and Change for undergraduate biology students is the Ability to Apply the Process of Science. Here, we describe a three-week laboratory module for students in...

    Keywords: metacognitiongene expressionScientific ProcessExperimenal DesignHypothesis Generationmodel organisms

    2149

    views

    431

    downloads

    0

    comments

    0

    adaptations

    Follow the Sulfur: Using Yeast Mutants to Study a Metabolic Pathway
    Students are frequently overwhelmed by the complexity of metabolic pathways and they think they have "learned" the pathway when they have memorized the individual reactions.  This...

    Keywords: SelectionyeastMetabolismcysteinemediamethioninemutantPathwaysulfur

    2396

    views

    589

    downloads

    0

    comments

    0

    adaptations

    Using Place-Based Economically Relevant Organisms to Improve Student Understanding of the Roles of Carbon Dioxide, Sunlight, and Nutrients in Photosynthetic Organisms
    Biology students require broad preparation for diverse careers including agriculture, natural resource management, and laboratory research. Concurrent with this need, employers are seeking...

    Keywords: energyphotosynthesisbiomass

    3715

    views

    402

    downloads

    0

    comments

    0

    adaptations

    Discovering Cellular Respiration with Computational Modeling and Simulations
    Cellular respiration, a common topic among introductory and cellular biology curricula, is a complex biological process that exemplifies core biological concepts, including systems, pathways and...

    Keywords: Cellular MechanismsCellular RespirationFermentation

    2805

    views

    330

    downloads

    0

    comments

    0

    adaptations

    Dynamic Daphnia: An inquiry-based research experience in ecology that teaches the scientific process to first-year biologists
    This authentic research experience lesson teaches the core concept of systems and the competencies of quantitative reasoning, communication, and the ability to apply science. The research is...

    Keywords: statisticsecologyscientific methodexperimental designAbiotic and Biotic FactorsDependent and Independent Variables

    2084

    views

    395

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search