You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Assessing Urban Biodiversity With the eBird Citizen Science Project: A Course-Based Undergraduate Research Experience (CURE) Module
    The eBird citizen science module takes advantage of technology tools and online resources developed by the Cornell Laboratory of Ornithology (http://ebird.org) to achieve several learning...

    Keywords: datacitizen sciencecommunityBiodiversitySpecieshypothesishabitat

    3043

    views

    885

    downloads

    0

    comments

    0

    adaptations

    Making bioinformatics tools classroom-friendly
    Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: bioinformaticsJupyterJupyter notebookBLASTCyVerseRNA sequencing

    1099

    views

    226

    downloads

    0

    comments

    0

    adaptations

    Discovering Cellular Respiration with Computational Modeling and Simulations
    Cellular respiration, a common topic among introductory and cellular biology curricula, is a complex biological process that exemplifies core biological concepts, including systems, pathways and...

    Keywords: Cellular MechanismsCellular RespirationFermentation

    2742

    views

    329

    downloads

    0

    comments

    0

    adaptations

    Using Musical Instruments to Model Negative Feedback in the Hypothalamo-Pituitary-Target Gland Axes
    Homeostasis and negative feedback are crucial, yet difficult, concepts for undergraduates, particularly in the context of the hypothalamo-pituitary axes. This interactive activity was designed to...

    Keywords: cell-cell communicationhomeostasisnegative feedback

    1039

    views

    146

    downloads

    0

    comments

    0

    adaptations

    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

    4033

    views

    394

    downloads

    1

    comments

    0

    adaptations

    Isolation and Functional Analysis of a Pancreatic Enzyme in an Introductory Student Lab
    Structure and function are correlated at all levels of biology. This topic is typically addressed early in an undergraduate class in general or molecular biology before students have gained much...

    Keywords: Protein StructureproteaseEnzymechemical bondscatalysissolubility

    3459

    views

    185

    downloads

    0

    comments

    0

    adaptations

    Marsh Madness: Using Video Games and a Case Study to Explore Food Webs and Ecosystem Services in Carpinteria Salt Marsh Reserve
    As the complexity and interconnectedness of our world increases, we are continually expected to be capable of complex, non-linear thinking in order to successfully tackle and solve the challenges...

    Keywords: food webssystems thinkingGame Based LearningEcosystem Servicessocio-ecological networks

    6030

    views

    248

    downloads

    1

    comments

    0

    adaptations

    A Structured Inquiry-Based Module for the Undergraduate Cell Biology Laboratory That Teaches Fundamental Concepts of Cell Differentiation
    Pedagogical research in science education has shown that students effectively learn science by doing science. As a result, there is increased interest in bringing research-like experiences into the...

    Keywords: fluorescence microscopygene expressionpolymerase chain reactionCell Structurecell culturewestern blottingdifferentiationreverse transcription

    548

    views

    2

    downloads

    0

    comments

    0

    adaptations

    Learn Biological Sciences and Mathematics through cellular respiration, photosynthesis and primary productivity.
    Photosynthesis is a process by which plants synthesize glucose and oxygen in presence of sunlight through light dependent reactions by utilization of sunlight, water to synthesize oxygen, ATP and...

    Keywords: mathematicssimulationThe Analysis of Biological DataMetabolic Pathwaysprocess of sciencephotosynthesisqbccBiological ScienceshypothesisCellular Respirationprimary productivity

    903

    views

    87

    downloads

    0

    comments

    0

    adaptations

    3-100-Ripcord-Toys-ModelingScenario
    This modeling scenario examines the motion of a ripcord-powered toy with the goal of using real data to estimate parameters in a first-order model of the velocity of the toy. Students may conduct...

    Keywords: dataphysicsdynamicsdata collectionrollingslippingripcordtoy

    317

    views

    290

    downloads

    0

    comments

    0

    adaptations

    2023-Roberto_Camassaa-Richard_McLaughlina-Tauberian identities and the connection to Wile E Coyote physics
    The application of the motion of a vertically suspended mass-spring system released under tension is studied focusing upon the delay timescale for the bottom mass as a function of the spring...

    Keywords: HangtimeTauberian IdentitiesRoad RunnerWile E. Coyote

    225

    views

    61

    downloads

    0

    comments

    0

    adaptations

    2015-Sivakumar-EtAl-Approximate Analytical Expression of Concentrations in a Kinetic Model for Biogas Generation from Banana Waste
    The initial value problem in a kinetic model for biogas generation from banana waste is discussed. The model involves the system of non-linear differential equations which has variety of non-linear...

    Keywords: chemical kineticsMichaelis-Menten kineticsanaerobic digestionacidogenic stepsbananamethanogenic stepswastes

    118

    views

    38

    downloads

    0

    comments

    0

    adaptations

    2004-Hill-Lozowski-Sampson-Experiments on ice spikes and a simple growth model
    We observed ice-spike growth using time-lapse digital photography, using two water types in two different containers.

    Keywords: iceice spikebulk heat transfermass conservation

    85

    views

    30

    downloads

    0

    comments

    0

    adaptations

    2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
    A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.

    Keywords: mRNAlactoselactose operonfeedback regulation

    159

    views

    53

    downloads

    0

    comments

    0

    adaptations

    2018-Van_Kinh Nguyen-Esteban_Hernandez-Vargas-Parameter estimation in mathematical models of viral infections using R
    Mathematical modeling has played a central role to understand mechanisms in different viral infectious diseases. In this approach, biological-based hypotheses are expressed via mathematical...

    Keywords: simulationdiseasevirusviral infection

    200

    views

    54

    downloads

    0

    comments

    0

    adaptations

    1-030-EyeModel-ModelingScenario
    We offer a mathematical modeling experience using differential equations to model the volume of an intraocular gas bubble used by ophthalmologists to aid the healing of a surgically repaired region...

    Keywords: retinal surgeryAkaike Information CriterionSpanishsum of square errorssurgeryretionaophthalmologyeyeintraocular gas bubble

    1214

    views

    702

    downloads

    0

    comments

    0

    adaptations

    1-137-SheepGraze-ModelingScenario
    In this activity, students will apply graphical analysis (such as phase lines) to determine the long-term predictions of a differential equation model for pasture grass using two different formulas...

    Keywords: herbivoreplantphase linesbifurcationoverexploitationsheepgraze

    180

    views

    174

    downloads

    0

    comments

    0

    adaptations

    1-139-PlantsVsHerbivores-ModeliongScenario
    In this activity, students will apply a variety of techniques for analyzing nonlinear systems (e.g., nullclines, linearization, and technologies for drawing phase portraits) to study...

    Keywords: ecologynullclinesherbivoreplant-herbivore interactionsplantlinearization

    257

    views

    220

    downloads

    0

    comments

    0

    adaptations

    4-039-FallingDarts-ModelingScenario
    we develop, solve, and analyze a second order differential equation model for free fall incorporating air resistance. Students solve the model using two methods -- reduction of order and...

    Keywords: optimizationresistanceterminal velocitymuzzle velocitydrag coefficientfree fallair drag

    244

    views

    288

    downloads

    0

    comments

    0

    adaptations

    10-100-InsectOutbreaks-ModelingScenario
    We use a system of difference equations that incorporates a temperature-dependent MPB population growth rate to model the outbreak and recovery cycle in mountain pine beetle-infested forests.

    Keywords: ecologyclimate changeinsectinsect outbreaksinsect outbreaksolitary wave

    252

    views

    420

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search