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Making bioinformatics tools classroom-friendly

Author(s): Jason Williams, Wilson Leung1, Cornel Ghiban2

1. Washington University in St. Louis 2. Cold Spring Harbor Laboratory

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Summary:
Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

Licensed under CC Attribution-NonCommercial-ShareAlike 4.0 International according to these terms

Version 1.0 - published on 23 Jul 2020 doi:10.25334/F17W-PK51 - cite this

Keywords

  1. bioinformatics
  2. Jupyter
  3. Jupyter notebook
  4. BLAST
  5. CyVerse
  6. RNA sequencing

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Description

Additional Co-Authors include the Genomics Education Alliance

Genomics and other areas of biology rely heavily on the tools of bioinformatics, data science, and computing. Bringing these tools into the classroom can be daunting – both in determining which tools to use and managing their use. The Genomics Education Alliance (GEA) is a newly NSF-funded research collaboration network (RCN-UBE #1827130). This alliance has brought together several well-known educators and educational projects. Resources in development by GEA include a core set of computational tools and we will demonstrate how we have used CyVerse resources to make classroom that make using bioinformatics in the classroom a more manageable experience.

Learn more at Introduction to RNA-Seq: Leptin expression in mouse

Extended video walkthrough of RNA-Seq with Jupyter

 

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