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    A Framework for Teaching Modeling to Biologists
    Abstract for presentation at SIAM ED 2016 on modeling

    Keywords: modelingSIAM

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    2012-Murray_Bourne-Modeling fish stocks
    Discusses many models of harvesting and consequences.

    Keywords: fishlogisticmanagementsusustainable developmentharvestfish stockoverpopulatedunsustainable

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    2005-HP-Hirst-Using the Historical Development of Predator-Prey Models to Teach Mathematical Modeling
    Using the Historical Development of Predator-Prey Models to Teach Mathematical Modeling.

    Keywords: predator-preyhistory

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    2014-Yahdi-EtAl-Modeling and Sensitivity Analysis of the Role of Biodiversity to Control Pest Damage in Agroecosystems
    The paper provides a mathematical framework for cost-effective and environmentally safe strategies to minimize alfalfa damage from pests in alfalfa agroecosystems with optimal biodiversity levels.

    Keywords: sensitivity analysispredatorsteady statealfalfaShannon diversity indexplant herbivore

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    2000-Erdman-Morelock-A Study of Kinetics The Estimation and Simulation of Systems of First-Order Differential Equations
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: kineticsSAScompartmentpharmacokinetics

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    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.

    Keywords: Individual & Agent Based Modelingpredator-preythink-pair-shareslynxrefugeprey switchingMustela-Clethrionomys systempatter oriented

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    1999-PS_Crooke-S_Hota_JJ_Martini-JR_Hochkiss-A Mathematical Model for Carbon Dioxide Exchange
    A mathematical model is presented to study the effect of Tracheal Gas Insufflation (TGI) on the alveolar ventilation during passive, mechanical ventilation.

    Keywords: mechanical ventilationventilationcarbon dioxide exchangetracheal gas insufflationalveolar ventilationshunttwo-compartment model

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    1996-D_Erdman-MM_Morelock-A Study of Kinetics
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: simulationkineticsparameter estimationEnzymesubstratesavingscompartmentstomachbloodginseng

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    2011-Lucas_Pulley-Analyzing Predator-Prey Models Using Systems of Ordinary Linear Differential Equations
    This research focused on applying biological mathematics to analyzing predation relationships, especially the relationship between the Canadian Lynx and the Snowshoe Hare.

    Keywords: simulationpredator-preyLotka-VolterrapopulationCanadian LynxSnowshoe Harecritical values

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    Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities
    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    Keywords: bioinformaticsNIBLSEincubators

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    2014-Murillo-EtAl-Vertical Transmission in a Two-Strain Model of Dengue Fever
    The model is used to show that lower transmission rates of DENV-2 Asian are sufficient for displacing DENV-2 American in the presence of vertical transmission.

    Keywords: Peruvector-host modeldengueepidemmiologyvertical transmission

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    2009-Marten-EtAl-Derivation and analysis of an ordinary differential equation for epilepsy dynamics
    In this paper we describe how an ordinary differential equation model of corticothalamic interactions may be obtained from a more general system of delay differential equations.

    Keywords: delayepilepsy dynamicsepilepsybistabilityseizure activity

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    2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
    A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.

    Keywords: mRNAlactoselactose operonfeedback regulation

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    1998-K_H_Louie_Clark-P_C_D_Newton-Analysis of differential equation models in biology-clover meristem populations
    A simple differential equation model (dynamical system) for clover, based on meristem numbers, is outlined and analysed mathematically.

    Keywords: sensitivity analysisstability analysissteady statesgrowing pointsbudsmeristems

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    1968-Wagner-Aghajanian-Bing-Correlation of performance test scores with tissue concentration of lysergic acid diethylamide
    This paper offers a two compartment model of lysergic acid diethylamide (LSD) in volunteer students and through parameter estimation models the amount of LSD in the tissue after its initial...

    Keywords: LSDcorrelation coefficientcompartment modellysergic acid diethylamideperformancetest scoretissue concentration

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    2018-Meredith_Greer-Ella_Livesay-Mathematical Epidemiology Goes to College
    In this article we present models that were inspired by two real-life outbreaks at a small residential college campus: H1N1 influenza in 2009 and, surprisingly, mumps in 2016.

    Keywords: epidemiologydiseaseH1N1Influenzaoutbreak

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    2011-Kurt_Kreith-The Mathematics of Global Change
    The authors discuss broad issues and then focus on specifics like exponential growth, logistic growth, and the logistic equation with delay.

    Keywords: exponential growthlogistic growth

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    2020-TeachingModule-GeometricBehaviorOfLinearSysteModeling
    This module concentrates on the geometric properties of a system of 2 linear, homogeneous first order differential equations in 2 variables as dictated by the corresponding eigenvalues. Students...

    Keywords: modulelinear systemsdigoxinTeaching Module

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    2017-ASHP-Intro to Pharmacokinetics and Pharmacodynamics
    This is the introductory Lesson 1 in an online set of materials to introduce Pharmacokinetics and Pharmacodynamics.

    Keywords: absorptioncompartmentbloodstreamplasmapharmacokineticsdrugpharmacodynamics

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    2017-ASHP-Intro to Pharmacokinetics and Pharmacodynamics
    This is the introductory Lesson 1 in an online set of materials to introduce Pharmacokinetics and Pharmacodynamics.

    Keywords: absorptioncompartmentbloodstreamplasmapharmacokineticspharmacodynamicstherapeutic concentration rangedrug dispositiondrug response

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