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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Defining Life: Exploring Creativity, Scientific Discovery, and Biology Core Concepts in a Disciplinary First-Year Seminar
    This unit, Defining Life, engages students in thinking like scientists, applying creativity to science, and learning biology core concepts as they explore the defining characteristics of life. This...

    Keywords: Evolutionbiologycellprocess of science

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    Inclusive Pedagogy for Life Science Education Tagging Ontology
    Inclusive Pedagogy for Life Science Education Tagging Ontology

    Keywords: ontology

    1706

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    Videos on Java for courses at University of Tennessee
    Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga

    Keywords: videosjavabioinformaticsgenomicsyoutube

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    Java for-loop, investment problem, with debug flag usage demo
    BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.

    Keywords: videosjavabioinformaticsgenomicsyoutubeBig Java

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    Screen Casts for Foundations of Bioinformatics at UCSD
    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213

    Keywords: videosbioinformaticsgenomicsyoutubescreen cast

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    How do we do Bioinformatics?
    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    Keywords: bioinformaticsgenomicsyoutubescreen cast

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    What is Bioinformatics?
    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

    Keywords: videosbioinformaticsgenomicsyoutubescreen castintroductory bioinformatics

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    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    Keywords: bioinformaticsgenomicsyoutubescreen cast

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    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    Keywords: videosbioinformaticsproteinsgenomicsyoutubeprotein physiochemistryExPasy ProtpramSOSUI serverPSortB

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    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

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    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

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    Fostering and sustaining interdisciplinary faculty communities around undergraduate teaching: Insights from the QUBES project
    Presentation part of a minisymposium at the SIAM Applied Mathematics Education (ED18) conference, "Communities of Practice for Math Modeling Education"

    Keywords: SIAMapplied mathematicsfaculty communities

    1178

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    Understanding Restriction Enzyme Digests
    Prior to submitting genomic DNA for sequencing, SEA students perform a restriction endonuclease digest with several enzymes, which provides a fast and cost-effective way of quickly screening...
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    Cutthroat trout in Colorado: A case study connecting evolution and conservation
    Evaluation of evidence is a key process skill for the core competencies of applying the process of science and using quantitative reasoning. This case study enables upper-division biology students...

    Keywords: population geneticsphylogeneticsSpeciationdivergencegene flow

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    Navigating Proposal Writing and Implementation of an NSF S-STEM Grant Program: Reflections as a First-Time PI
    Recruitment and retention issues are an increasing concern to many institutions nationwide, most especially in regard to underrepresented minority (URM) students enrolled in STEM. It is, therefore,...

    Keywords: Proposal writingGrant managementNSF S-STEM

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    Looking at Climate change through the geological timescale lens with Dr. Julia Kelson
    We are currently witnessing one of the most dramatic climate change events in Earth’s history. This begs the following question: how has Earth’s climate changed throughout geologic time? Dr. Julia...

    Keywords: climate changegeology

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    Digging up history with a ‘real-life Indiana Jones’ Dr. Sarah Barber
    In this exciting talk, Dr. Sarah "Stacy" Barber discusses her exciting research covering: 1. Documentation of geological, hydrodynamic, and ecological change in the Indian River Lagoon, and 2....

    Keywords: human impactsarchaeology

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    River and Tree health of the Truckee River Basin with Noelle Patterson
    Today we are highlighting our talk with Ph.D. student Noelle Patterson discussing watersheds, the history of the Truckee River Basin, and the health of Cottonwoods in the region.

    Keywords: ecologyteachinghydrology

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