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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Learn Biological Sciences and Environmental Science through biodiversity and pollution
    Biodiversity or biological diversity is the variety of and variability of biological life on Earth. Biodiversity is existing due to variation among living organisms from different sources air,...

    Keywords: databiologydata scienceBiodiversityclimateenvironmental scienceSpeciespollutionanalyze data

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    2004-Hill-Lozowski-Sampson-Experiments on ice spikes and a simple growth model
    We observed ice-spike growth using time-lapse digital photography, using two water types in two different containers.

    Keywords: iceice spikebulk heat transfermass conservation

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    2018-Akman-EtAl-Parameter Estimation in Ordinary Differential Equations Modeling via Particle Swarm Optimization
    We demonstrate Particle Swarm Optimization efficacy by showing that it outstrips evolutionary computing methods previously used to analyze an epidemic model.

    Keywords: epidemicParticle Swarm Optimizationoptimize parameters

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    2015-Doust-Saraj-The logistic modeling population having harvesting factor
    The present paper deals with the logistic equation having harvesting factor, which is studied in two cases constant and non-constant.

    Keywords: logisticharvestharvesting factor

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    Urban Ecology
    This video describes the field of urban ecology and features scientists who use the city as their field site.

    Keywords: videosecologyurban ecologyScience Forward

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    Using Science Education Gateways to Improve Undergraduate STEM Education: The QUBES Platform as a Case Study
    This paper describes BioQUEST's vision for the QUBES platform as an engine for science education reform. 

    Keywords: Science Education Gateway

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    2013-Herald-EtAl-Simple Climate Models to Illustrate How Bifurcations Can Alter Equilibria and Stability
    While college level science classes now frequently include exposure to climate change issues, not all science majors, math majors and future math K-12 teachers are likely to see climate issues in...

    Keywords: climate changeice capstipping pointbifuircation

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    2011-Gaff-Lenhart-Use of optimal control models to predict treatment time for managing tick-borne disease
    Tick-borne diseases have been on the rise recently, and correspondingly, there is an increased interest in implementing control measures to decrease the risk. Optimal control provides an ideal tool...

    Keywords: diseaseoptimal controlTICKtick modeehrlichiosisbang bang control

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    ICABL: An Inclusive Community for the Assessment of Biochemistry and Molecular Biology (BMB) Learning (RCN-UBE Introduction)
    ICABL is an inclusive and collaborative community that supports the professional development of biochemistry and molecular biology scientist-educators committed to the enhancement of student...

    Keywords: RCN-UBE Introduction

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    2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
    A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The

    Keywords: glucose tolerance testsum of squared residualsmultiple shooting methodcost function

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    Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2
    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    Keywords: phylogeneticsundergraduate educationbioinformaticsNCBICOVID19coronavirusMEGAPyMolvirtual labPDBprotein modelingSARSSARS-CoV

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    Learning Journal Assignment on Biofilms
    This is a learning journal assignment with constructive response questions on Biofilms which undergraduate students can complete with aid of reading a research article and listening to a podcast.

    Keywords: educationPodcastmicrobiologygenomicsUndergraduateAnalysisBioflimsLearning Journal Assignmet

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    Geography and Embodied Perceptions: a pathway to reanimating rivers through lived experiences.
    In this lesson students embark upon a journey through the many ways we come to know a watershed, with foci on its physical geography and our embodied perceptions. This enables students to formulate...

    Keywords: PhilosophygeographyRiver Field Studies Networkperceptionwatershednature journalexperiencesensationhumanityplacehomeembodied perceptionsense of placeplace attachmenttransdisciplinaryqualitative methodscalable

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    Sleep and Learning Lab
    Students use sleep and exam data from Introductory Biology students to investigate the question: Does a circadian rhythm, the sleep-wake cycle, influence an important mammalian adaptation, the...

    Keywords: animal behaviorlab activitycircadian biologysmall group workthink-pair-shares

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    Hands-On, Hands-Off: The Community College Genomics (ComGen) Course-Based Undergraduate Research Experience
    Science is a process of discovery where failure is inherent and iteration is necessary, yet instructors often teach the scientific process as if it is a controlled, highly supervised, confirmatory...

    Keywords: geneticssequencingDNAbacterium

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    BioQUEST Webinar: CourseSource - YouTube
    Follow the link to the webinar video, "An Introduction to the CourseSource Journal and Making Your Own Collections". This webinar provides an overview of CourseSource, how to publish your teaching...
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    Molecular Biology of the Cell (MBoC)
    An online journal focusing upon generally-applicable studies of cell biology.

    Keywords: cell biologycellmolecular biologyResources @ ASCBResources @ QUBES - Teaching & Reference

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    Quantitative Reasoning: Peer Review 16(3), 2014
    In this issue of the journal Peer Review, the authors discuss the issues surrounding quantitative literacy.

    Keywords: mathematicseducationquantitativemathQuantitative reasoningquantResources @ AACUproceedingsResources @ QUBES - Teaching & Reference

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    SNAPSHOT SERENGETI: Analyzing Wildlife Ecological Relationships in an upper-level Ecology course
    Two assignments were created to develop skills in ecological hypothesis testing, data analysis and interpretation using the Snapshot Serengeti and Gorongosa camera trap data and graphical...

    Keywords: hypothesis testinggraphical analysis and interpretationsavannah biomeecological relationshipscompare and contrast to primary literature

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    SCIENCE/Fiction: Modular Template for Class Design
    We present a modular scaffold for designing an introductory seminar using speculative fiction and science papers to welcome university undergraduates to the biology major. A list of twelve possible...

    Keywords: geneticscell biologyneurosciencesystems biologyScience Fiction

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