QUBES will have scheduled maintenance work beginning on Wednesday, June 26, 2024, 4pm ET/1pm PT. The platform will operate normally for most of the day, except for an extended outage period lasting no more than 4 hours. All running tool sessions will expire during the maintenance window. Please plan accordingly and we do apologize for any inconvenience. close

You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.

    Keywords: gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing

    103

    views

    49

    downloads

    0

    comments

    0

    adaptations

    Using Musical Instruments to Model Negative Feedback in the Hypothalamo-Pituitary-Target Gland Axes
    Homeostasis and negative feedback are crucial, yet difficult, concepts for undergraduates, particularly in the context of the hypothalamo-pituitary axes. This interactive activity was designed to...

    Keywords: cell-cell communicationhomeostasisnegative feedback

    1012

    views

    142

    downloads

    0

    comments

    0

    adaptations

    Reflective Writing Prompt
    This activity introduces the research showing a benefit of reflective writing, and then uses a modified version of the prompt from Park et al. to provide practice.

    Keywords: writingreflective writingmath attitudesResources @ BIOMAAP

    1025

    views

    271

    downloads

    0

    comments

    0

    adaptations

    Reflective Writing Adapted for Non-Majors
    This activity introduces the research showing a benefit of reflective writing, and then uses a modified version of the prompt from Park et al. to provide practice. The prompts have been modified...

    Keywords: writingreflective writingmath attitudesResources @ BIOMAAP

    1147

    views

    443

    downloads

    0

    comments

    0

    adaptations

    Reflective Writing
    This activity introduces the research showing a benefit of reflective writing, and then uses a modified version of the prompt from Park et al. to provide practice.

    Keywords: writingreflective writingmath attitudesResources @ BIOMAAP

    1751

    views

    1123

    downloads

    0

    comments

    4

    adaptations

    Harnessing the Power of the Immune System: Influenza Vaccines
    Because most people have been infected by and/or immunized against influenza, students should know how the immune system responds to the infection and how vaccines protect against disease. Vaccines...

    Keywords: VaccinesInfluenzaImmunizationVaccine efficacy

    2435

    views

    468

    downloads

    0

    comments

    0

    adaptations

    Regulation Across Scales: Data Points on How Life Works
    We examined the scientific literature for simple, data-based illustrations of double-negative logic in the regulation of biological systems as described by Sean B. Carroll in his text, The...
    726

    views

    221

    downloads

    0

    comments

    1

    adaptations

    The Comics Project: Synthesizing and Communicating Science with Comics
    Students, especially non-science majors, often see science as abstracted from their daily lives. Moreover, students often struggle to translate scientific concepts into everyday language in order...

    Keywords: communicating scienceScience & Societycomics

    743

    views

    160

    downloads

    0

    comments

    0

    adaptations

    In-class peer grading of daily quizzes increases feedback opportunities
    Educators are familiar with evidence of the benefit that frequent and immediate feedback provides to our students, regardless of class size. We also often find ourselves in a situation where we do...

    Keywords: foundational knowledgegraphical interpretationtechnical terms

    900

    views

    96

    downloads

    0

    comments

    0

    adaptations

    Cross-Course Public Health Project on Infectious Disease
    The need for collaborative, public health education has never been more important. Students increasingly require necessary skills in effectively communicating critical information to the general...

    Keywords: infectionpublic healthVaccinespathogenesisantibiotics

    462

    views

    482

    downloads

    0

    comments

    0

    adaptations

    The Carbon Cycle, Climate Change, and Feedback Loops
    I combined material from the Carbon, Climate and Energy Resources Module and the Changing Biosphere Module to help students understand climate change, the carbon cycle, and feedback loops in my...
    1348

    views

    320

    downloads

    0

    comments

    0

    adaptations

    The Importance of Street Trees and Urban Avifauna: A lesson exploring the relationship between urban forest and foraging birds
    This module examines the relationship between street trees, urban avifauna, and socioeconomic gradients in the highly urbanized county of Los Angeles, California. Using edited data from a published...

    Keywords: conservationBiodiversityurbanizationGeneralized linear modelsavifaunaurban forestsocioeconomicsstreet treesnegative binomial regression

    915

    views

    590

    downloads

    0

    comments

    0

    adaptations

    Cell Signaling Pathways - a Case Study Approach
    Signaling and gene expression are fundamental to cell biology and developmental biology. Although these topics are highly interrelated, they typically appear in separate units in a course. We use a...

    Keywords: signal transductiongene expressionCell communicationgenetic disordersregulation of enzyme activity

    5034

    views

    2521

    downloads

    0

    comments

    0

    adaptations

    Using Pathway Maps to Link Concepts, Peer Review, Primary Literature Searches and Data Assessment in Large Enrollment Classes: An example from teaching ecosystem ecology
    As with many other complex topics, teaching ecosystem ecology can be particularly difficult in terms of helping students understand the relationships between the various component parts. We...

    Keywords: energyecosystemNutrientsPathway

    1197

    views

    487

    downloads

    0

    comments

    0

    adaptations

    2008-Huet-Deffuant-Differential Equation Models Derived from an Individual-Based Model Can Help to Understand Emergent Effects
    We study a model of primacy effect on individual's attitude. Typically, when receiving a strong negative feature first, the individual keeps a negative attitude whatever the number of moderate...

    Keywords: agent-based modelprimacy effectinformation filteringaggregated modelcollectiveinteractionsdouble-modelling

    102

    views

    45

    downloads

    0

    comments

    0

    adaptations

    Using Synthetic Biology and pClone Red for Authentic Research on Promoter Function: Introductory Biology (identifying new promoters)
    Students often memorize the definition of a transcriptional promoter but fail to fully understand the critical role promoters play in gene expression. This laboratory lesson allows students to...

    Keywords: bacteriasynthetic biologygene regulationtranscriptionstudent researchcentral dogmacloningpromoterreporter gene/protein

    2681

    views

    571

    downloads

    0

    comments

    0

    adaptations

    2012-Campbell-EtAl-Parameter estimation in differential equation models with constrained states
    We introduce a method to estimate parameters and states from a differential equation model while enforcing interpretability constraints such as monotone or non‐negative states.

    Keywords: chemical engineeringsmoothing-based relaxation method

    162

    views

    27

    downloads

    0

    comments

    0

    adaptations

    T2R38 taste receptor polymorphisms underlie susceptibility to upper respiratory infection
    Article presenting evidence that the bitter taste receptor T2R38 regulates the mucosal innate defense of the human upper airway.
    579

    views

    103

    downloads

    0

    comments

    0

    adaptations

    Birthday Problem and Class Phenotypic Probabilities
    An Excel workbook exploring two related applications, the Birthday Problem and Class Phenotypic Probabilities. Students enter their own phenotypes into the workbook.

    Keywords: ExcelResources @ ESTEEMphenotypic probabilityallelic frequency

    993

    views

    203

    downloads

    0

    comments

    0

    adaptations

    2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
    A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.

    Keywords: mRNAlactoselactose operonfeedback regulation

    149

    views

    51

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search