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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    Keywords: bioinformaticsgenomicsyoutubescreen cast

    1144

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    250

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    Video Tutorials for Computational Genomics
    YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.

    Keywords: videosbioinformaticsgenomicsfmnyoutube

    1365

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    106

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    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    Keywords: videosbioinformaticsproteinsgenomicsyoutubeprotein physiochemistryExPasy ProtpramSOSUI serverPSortB

    1134

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    325

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    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

    1068

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    236

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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

    1193

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    259

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    NCBI Overview
    An overview of some of the databases within NCBI and how to get FASTA sequences.

    Keywords: videosbioinformaticsFASTAgenomicsNCBIyoutube

    1080

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    206

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    UniProt
    Brief description of UniProt and its databases and features

    Keywords: videosbioinformaticsgenomicsyoutubeuniprot

    1255

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    227

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    GSEAtheory
    Brief introduction to how gene set enrichment analysis works.

    Keywords: videosbioinformaticsgenomicsyoutubegsea

    1360

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    258

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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

    1290

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    261

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    What is bioinformatics?
    Short description of what bioinformatics is, it's potential applications, and what it is not.

    Keywords: videosbioinformaticsgenomicsintroductionyoutube

    1105

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    233

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    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

    1616

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    247

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    Development of the NIBLSE Learning Resource Collection and Incubators
    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces

    Keywords: bioinformaticsNIBLSEincubators

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    NEON data in undergraduate ecology courses: Data skills and learning opportunities
    Presentation made by Wendy Gram et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America...

    Keywords: Ecological Society of AmericaNEONNational Ecological Observatory Network

    1155

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    182

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    Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods
    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    Keywords: data in the classroomdata interpretationprecipitationstream dischargePalmer Drought Severity IndexlidarEcological Disturbancedisturbance ecologyHigh School

    3004

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    1244

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    2

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    Incubators: A community based model for improving the usability of bioinformatics learning resources
    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    Keywords: NIBLSEincubators

    1442

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    206

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    Open science, open data, open source projects for undergraduate research experiences
    Resource from the 2015 BioQUEST Summer Workshop
    1291

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    Mentoring Undergraduate Research Projects in Mathematical Biology
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: epidemiologymentoringcurriculumundergraduate researchGene regulatory networkpest management

    1454

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    218

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    0

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    QUBES: A vision of community collaboration in teaching and learning in quantitative biology
    Presentation about new projects QUBES is pursuing and how to get involved. Presented at the Seventh International Symposium on Biomathematics and Ecology: Education and Research 2014, Claremont, CA.

    Keywords: QUBESquantitative biologyteaching

    1496

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    264

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    QUBES News, Highlights, and the Grand Opening of QUBESHub.org
    Abstract for a panel discussion about QUBES. Part of a minisymposium at BEER 2015.
    1291

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    400

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    Faculty Mentoring Networks: A model for professional development in undergraduate quantitative biology education
    Presentation given at ESA 2016 on Faculty Mentoring Networks.

    Keywords: faculty mentoring networksEcological Society of Americaquantitative biology education

    1465

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    186

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