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    Long-read Sequencing Technology
    This 50 minute lecture on long-read sequencing technology covers the following items: 1) Review of RNA-Seq Short-read Sequencing, 2) Overview and benefits of Long-read Sequencing, 3) Oxford...

    Keywords: sequencingDNA sequenceRNA sequencingNanoporepacbiopacific biosciences

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    Mentoring Pacific Island Students for Conservation
    This undergraduate internship program focuses on mentoring Pacific Island Students into conservation careers through development of skills, networks and sense of self, while being grounded in...

    Keywords: internshipconservation ecologyplace based learningSelf-Efficacycultural contextExperiential Education

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    2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
    This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological...

    Keywords: epidemiologysensitivityImmunologyphysiologyRK-methodstime-lags

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    CONNECT Network - Community of Neighboring and National Entrepreneurial Centers and Trainees Network (RCN-UBE Introduction)
    Our goal is to establish a community of practice that invites entrepreneurs, scientists, educators, and students to share expectations, experiences, and best practices in the field of biosciences...

    Keywords: RCN-UBE Introduction

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    Introduction to UNIX command line
    A laboratory module for an upper-level undergraduate biology course in which students will be able to carry out simple tasks using the Unix command-line environment.

    Keywords: NIBLSEcommand lineUNIXsequence analysis

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    2002-Nelson-Perelson-Mathematical analysis of delay differential equations models of HIV-1 infection
    We develop and analyze a set of models that include intracellular delays, combination antiretroviral therapy, and the dynamics of both infected and uninfected T cells.

    Keywords: infectionHIVT cells

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    SOAR - San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research to enhance STEM education and assess human impacts on avian biodiversity (RCN-UBE Introduction)
    The San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research (SOAR) brings together faculty, students, and volunteers to implement an experiential learning and...

    Keywords: RCN-UBE Introduction

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    Using the Project Eddie Module “Paleoclimate and Ocean Biogeochemistry” in the Upper-Division Undergraduate Course “Climate and the Earth System”
    Students explore and compare datasets on modern nutrient concentrations and productivity, as well as paleo datasets to try to answer the question: “How does primary productivity influence global...

    Keywords: BiogeochemistryPaleoclimatepleoceanographygeochemistry

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    1999-T_Chen-HL_He-GM_Church-S_Shafer-Modeling Gene Expression with Differential Equations
    The paper proposes and give great detail for a differential equation model for gene expression with two methods for constructing the model from a set of temporal data.

    Keywords: gene expressiongenekineticgene translationgene transcription

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    Promoting Academic Success of Economically Disadvantaged, STEM-Interested, First- and Second-Year Undergraduate Students via the ACCESS in STEM Program at University of Washington Tacoma
    At the University of Washington Tacoma (UWT), a public, predominantly undergraduate, minority-serving institution (Asian-American, Native American, Pacific Islander, AANAPISI), the Achieving Change...

    Keywords: course based undergraduate research experiencesNSF S-STEMStudent mentoring

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    Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis
    in this exercise students will make suggestions for designing a comprehensive research program, use survey data, critically analyze results, and devise methods for study.

    Keywords: case study

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    Tell Them We Don't Want to Leave: The Marshallese and Sea-Level Rise (2014-10) | SESYNC
    This case study will expose students to the ways in which social-environmental systems operate and connect across different scales.

    Keywords: case studysocio-environmental data

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    Tutorial Combination and Online Implementation
    The two key features of my implementation is the fact that the tutorial was implemented in an online setting, and I added an assessment (also implemented in an online setting).

    Keywords: onlineScientific ProcessStatistics and MathScientific Methodology

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    2002-Dietz-Heesterbeek-Daniel Bernoulli-epidemiological model revisited
    The seminal paper by Daniel Bernoulli published in 1766 is put into a new perspective. After a short account of smallpox inoculation and of Bernoulli’s life, the motivation for that paper and its...

    Keywords: life tableepidemicsmallpoxDaniel Bernoullicompeting riskinoculation

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    2002-Patrick_Nelson-Alan_Perelson-Mathematical_analysis_of_delay_differential _equation_models_of_HIV-1_infection
    Models of HIV-1 infection that include intracellular delays are more accurate representations of the biology and change the estimated values of kinetic parameters when compared to models without...

    Keywords: delayHIV-1T cellscombination antiviral therapy

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    Implementing an online module about impacts of pollution from gold mining in an undergraduate ecology course in the Pacific Northwest, USA
    Students learn about biomagnification of toxins, build skills in graphical interpretation, and apply field methods to tackle complex issues about small-scale gold mining in the Peruvian Amazon....

    Keywords: food websmercury biogeochemistryBioaccumulationbiomagnificationPeruvian Amazon

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    1984-Marguerite_Hays-Compartmental Models for Human Iodine Metabolism
    Compartmental models for the various aspects of human iodine metabolism are reviewed, emphasizing the role of Mones Berman in the development of this field.

    Keywords: compartment modeliodinethyroid

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    Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis
    Based on the sea turtle case, students will (1) work on a worksheet by analyzing existing survey data, (2) conduct a literature review of two relevant research, and (3) draft a proposal for a...

    Keywords: sea turtle conservationliterature reviewResearch methodsProposal writingPalmyra Atoll

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    Implementing an online module about tropical seed dispersal and restoration in an undergraduate ecology course in the Pacific Northwest, USA
    This “Spreading Seeds” case study introduces students to ecology of seed dispersal mutualisms, and their importance for forest restoration. The implementation plan teaching notes, and associated...

    Keywords: mutualismRestoration Ecologyspecies interactionHabitat fragmentationSeed dispersalforest recovery

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    2015-Sebesyen-Farago-Invasive Species Model with Linear Rat Harvesting on Easter Island
    In this paper we suggest a natural modification of this model. Namely, we will investigate the case where the amount of the rats is decreased due to some external factor, e.g., exterminations by...

    Keywords: carrying capacityharvestEaster Islandinvasie especiesratsRoughgarden theorem.

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