You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    7-010-MultipleDoses-ModelingScenario
    Two multiple dose drug administration regimens are offered. A drug is to maintain a certain level (above a set minimum and below a set maximum) in the blood stream and one regimen involves bolus...

    Keywords: drug discoverystep functiondoseDiracdrug administrationinverse Laplace Transformintraveneousbolussteady drip

    286

    views

    222

    downloads

    0

    comments

    0

    adaptations

    4-050-ResonanceBeats-ModelingScenario
    We study what can happen when a pure oscillator (no damper) is driven by a forced vibration function which has the same or close to the same natural frequency as the system it is driving.

    Keywords: Spring 2020 workshopvibrationtuningdriverresonanceforced vibrationundampedbeatsnaturl frequency

    187

    views

    205

    downloads

    0

    comments

    0

    adaptations

    1-127-FishHarvesting-ModelingScenario
    We offer students a harvesting model for operating a fishery over a 25 year horizon and ask them to write a report on optimal harvesting policy with their analyses for fishing industry experts (not...

    Keywords: Management Of Dataoptimal controlfisherieslogisticharvestingmaximum sustainable yield

    281

    views

    240

    downloads

    0

    comments

    0

    adaptations

    3-105-FrequencyResponse-ModelingScenario
    We describe the frequency response to a second order differential equation with a driving function as the maximum steady state solution amplitude and perform some analyses in this regard.

    Keywords: transient dynamicscircuitspring massdriverfrequency responseamplitudesteady state

    224

    views

    194

    downloads

    0

    comments

    0

    adaptations

    1-126-MarriageMath-ModelingScenario
    We will explore a model which describes the process of entry into marriage by an individual. In the model, rate of change in the fraction of the cohort already married will be investigated along...

    Keywords: marriageGompertz function

    199

    views

    387

    downloads

    0

    comments

    0

    adaptations

    1-108-PoissonProcess-ModelingScenario
    In this project students learn to derive the probability density function (pdf) of the Poisson distribution and the cumulative distribution (cdf) of the waiting time. They will use them to solve...

    Keywords: Probabilitysstochastic processesPoisson processwaiting timearrival

    240

    views

    166

    downloads

    0

    comments

    0

    adaptations

    7-008-MachineReplacement-ModelingScenario
    Students build an integro-differential equation model using a convolution for machine replacement strategies for two different machine failure models.

    Keywords: Probabilityreplacement numberLaplace transformindustrial engineeringmachineconvolutiondistributiojstep functionderivative definition

    359

    views

    150

    downloads

    0

    comments

    0

    adaptations

    5-040-TunedMassDamper-Part-I-Modeling Scenario
    We offer an opportunity to build mathematical models to mitigate dangerous displacements in structures using structural improvements called Tuned Mass Dampers. We model the motion of the original...

    Keywords: structurespring-mass-dashpotspring massearthquakevibrationtuned mass tunerrestoring forcecontroldampe

    474

    views

    1173

    downloads

    0

    comments

    0

    adaptations

    Splicing it Together: Using Primary Data to Explore RNA Splicing and Gene Expression in Large-Lecture Introductory Biology
    At the heart of scientific ways of knowing is the systematic collection and analysis of data, which is then used to propose an explanation of how the world works. In this two-day module, students...

    Keywords: gene regulationtranscriptiongene expressioncentral dogmarepressoralternative splicingmRNA processingActivatorTranscription factors

    3433

    views

    519

    downloads

    0

    comments

    0

    adaptations

    Electron Location, Location, Location: Understanding Biological Interactions
    Introductory Biology courses typically introduce the structure and function of biomolecules such as proteins and nucleic acids. To understand biomolecules fully, students require knowledge of...

    Keywords: hydrogen bondshydrophobicity/hydrophilicitypolar and non-polar covalent bonds

    2736

    views

    705

    downloads

    0

    comments

    0

    adaptations

    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

    3647

    views

    405

    downloads

    0

    comments

    0

    adaptations

    A How to Guide and Template for Designing a Puzzle Based Escape Room Game
    Educational games are one active and effective way of engaging students with material while also providing additional motivation to tackle challenging concepts. A particularly popular game concept...

    Keywords: Problem SolvingCollaborative WorkCorrect Misconceptions

    2385

    views

    293

    downloads

    0

    comments

    0

    adaptations

    Wenxiang 3.0
    Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the advantage over helical wheels of being planar graphs. Wenxiang 3.0 extends the original version by adding...
    652

    views

    230

    downloads

    0

    comments

    0

    adaptations

    Wenxiang 3.0
    Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the advantage over helical wheels of being planar graphs. Wenxiang 3.0 extends the original version by adding...

    Keywords: bioinformaticsproteinsWenxiang

    623

    views

    165

    downloads

    0

    comments

    0

    adaptations

    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

    4217

    views

    430

    downloads

    1

    comments

    0

    adaptations

    Sustainability and Justice: Challenges and Opportunities for an Open STEM Education
    Combining understanding of OER sustainability and equity and justice to carve out ideas for the future of STEM open education.

    Keywords: sustainabilityOERsocial justicenonprofitdigital library

    956

    views

    215

    downloads

    0

    comments

    0

    adaptations

    Meiosis Remodeled: Inclusion of New Parts to Poppit Bead Models Enhances Understanding of Meiosis
    A long-standing tradition uses strings of poppit beads of different colors to model meiosis, especially to show how segments of paired homologous chromosomes are recombined. Our use of orthodontic...

    Keywords: meiosischiasma formationchromosome recombination

    6003

    views

    515

    downloads

    2

    comments

    0

    adaptations

    Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2
    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    Keywords: phylogeneticsundergraduate educationbioinformaticsNCBICOVID19coronavirusMEGAPyMolvirtual labPDBprotein modelingSARSSARS-CoV

    1203

    views

    628

    downloads

    0

    comments

    0

    adaptations

    Does Organelle Shape Matter?: Exploring Patterns in Cell Shape and Structure with High-Throughput (HT) Imaging
    Organelle structure has been studied and visualized for decades; however, publicly available databases that use improved high-throughput microscopy of gene-edited cell lines have recently...

    Keywords: modelingcase studymicroscopystructureOrganellesHigh-throughput (HT)Endoplasmic Reticulum (ER)Fluorescent microscopyHuman Cell Biology

    4741

    views

    470

    downloads

    0

    comments

    0

    adaptations

    Teaching the Central Dogma Using a Case Study of Genetic Variation in Cystic Fibrosis
    The central dogma of biology is a foundational concept that is traditionally included in genetics curricula at all academic levels. Despite its ubiquitous presence throughout genetics education,...

    Keywords: transcriptioncentral dogmatranslationsequence analysisDNA replicationgenetic variants

    4659

    views

    1159

    downloads

    1

    comments

    0

    adaptations

    Close

    Home

    Search