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    1-027-StochasticProcesses-ModelingScenario
    We build the infinite set of first order differential equations for modeling a stochastic process, the so-called birth and death equations. We will only need to use integrating factor solution...

    Keywords: VarianceMeanstochasticrandomoperations researchindustrial engineeringPoisson processtraffic

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    1-046-GoingViral-ModelingScenario
    Students participate in a simulation of the spread of a viral disease in the classroom and model the process with a logistic differential equation. The simulation uses random numbers and the entire...

    Keywords: simulationmathematical modeldatalogisticrandom number generatorfittingrandom process

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    An Introduction to the R Programming Environment
    An online module introducing students and biologists to R, published in American Phytopathological Society

    Keywords: epidemiologyRecologyR programming languagebioinformaticsprogrammingplant biologyNIBLSEplant pathology

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    Diseasebots HEXBUG Lab
    This module explores the effects of host density on contact rates and transmission of pathogens using a hands-on experiment with HEXBUG robots.
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    Exploring the Lytic and Lysogenic Life Cycles of Bacteriophages
    The goal of this lesson is to introduce students to the lytic and lysogenic cycles of T4 and lambda bacteriophages, respectively, using student-centered pedagogies. Bacteriophages are viruses that...

    Keywords: bacteriophagesLysogenic cycleLysogenyLytic cycle

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    Module M.5 Linear mixed-effects models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    HSI - Student Research Journal - Vol.3 Issue 1 - Summer 2021
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 3 - Issue 1 - Summer 2021...

    Keywords: scientific methodscience education

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    9-005-InvasiveSpeciesModel-ModelingScenario
    This scenario takes students through the development of an invasive species partial differential equation model. Basic models are discussed first, which lead students to eventually develop their...

    Keywords: Invasive Specieslogisticmigrationtraveling wavesdispersion

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    Maternal transmission of microbiome
    Understanding the cascading effects of the transfer of maternal microbiome during a vaginal birth (vs. a c-section) to the well-being of a newborn.

    Keywords: microbiomehuman reproduction

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    1-047-Condensation-ModelingScenario
    We simulate the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top walls and condenses on the bottom wall. Animations are produced and...

    Keywords: simulationsum of square errorscondensationbest fit

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    How Luxury and Legacy Effects Shape Urban Avifauna in Los Angeles, California
    Is L.A.’s bird population shaped by historic redlining and income inequality? This lesson will introduce luxury and legacy effects hypotheses as they relate to urban avifauna in LA neighborhoods....

    Keywords: ANCOVASimple Linear Regressionurban ecologyredliningavian ecology

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    Probing Subunit Interactions in 3-Phosphoglycerate Dehydrogenase
    A research poster.

    Keywords: JoCURE

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    2014-Eckhoff-EtAl-Fun with maths-exploring implications of mathematical models for malaria eradication
    . In this note, four examples demonstrate both the effects of model structures and assumptions and also the benefits of using a diversity of model approaches fomalaria eradication strategies.

    Keywords: vaccinemalariamigrationeradicationseasonality

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    The Biology of Climate Change: The effects of a changing climate on migrating and over-wintering species at a high-elevation field station
    Students evaluate weather and phenology data sets spanning 40+ years from a high-elevation field station in the Colorado Rocky Mountains, to test predictions about the effects of climate change on...

    Keywords: species interactionsclimate changefmnphenologyDIGenvironmental variationtrophic mismatch

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    Effects of Laptop Use on Student Learning
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: classroomcurriculumlecture slidescourselaptopstudent learningsyllabusin-class activity

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    A virtual laboratory on cell division using a publicly-available image database
    Cell division is a key concept in cell biology. While there are many popular activities to teach students the stages of mitosis, most make use of simple schematics, cartoons, or textbook diagrams....

    Keywords: image analysismicroscopymitosisCellular Processes

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    2010-Scott_Carrell-James_West-Does_Professor_Quality_Matter-Evidence_from_Random_Assignment_of_Students_to_Professors
    In the postsecondary environment, scores on student evaluations of professors are typically used to measure teaching quality. We possess unique data that allow us to measure relative student...

    Keywords: teachingevaluationfollow-on coursestudent achievement

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    1-039-StochasticPopModels-ModelingScenario
    We develop strategies for creating a population model using some simple probabilistic assumptions. These assumptions lead to a system of differential equations for the probability that a system is...

    Keywords: Probabilitypopulation dynamicsVarianceMeanstochasticdeterministic

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    1-047a-CondensationOptimization-ModelingScenario
    We seek to optimize a condensation process which is modeled by a simulation using the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top...

    Keywords: simulationdataoptimizationenergycondensationbest fitcostsum of scquare errors

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    Exploring Fitness and Population Change under Selection: Avida-Ed Lab Book Exercise 3
    An introductory activity exploring the process of natural selection in action using the Avida-ED simulation.

    Keywords: population geneticsfitnessavida-edsoftware simulationsSelectionevolutionary fitness

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