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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Discovery Poster Project
    Engaging in undergraduate research can be exciting yet intimidating to first-year students at large research universities. For first-generation college students, whose pre-college exposure to...

    Keywords: researchprimary literaturePostercore concepts

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    Modeling the Research Process: Authentic human physiology research in a large non-majors course
    Laboratory experiences in large-enrollment introductory science courses often utilize “cookie-cutter style” laboratory experiences due to the relative simplicity of setting up the lab...

    Keywords: data analysishypothesis testingexperimental designphysiology

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    Democratizing Student Access to Help: the nationwide, virtual peer mentoring network of the Genomics Education Partnership
    Our data suggests that online delivery of the novel Virtual TA program allowed the GEP CURE to remain effective through the transition from onsite to online: the GEP CURE is resilient. This...

    Keywords: Genomics Education PartnershipNABT2023

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    Introduction to Primate Data Exploration and Linear Modeling with R
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology research students on data management and statistical...

    Keywords: R programming languageprimatespopulation ecology

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    2010-Kijek-Kijek-Modelling of Innovation Diffusion
    This paper offers a first order differential equation model for innovation diffusion, solves it, and offers qualitative analysis as well as approaches to estimating parameters with some data on...

    Keywords: Bass modelinnovation diffusionLogistic modeldynamic model

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    The Correlation Between SARS-CoV-2 RNA in Wastewater and Rising COVID-19 Vaccination Rates, in Los Angeles California
    The COVID-19 pandemic has undoubtedly impacted everyone around the globe. In 2020, many countries entered into a lockdown, transforming daily lifestyles into isolation. The SARS-CoV-2...

    Keywords: RNASARS-CoV-2wastewater

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    Conserving Water in a Time of Climate Change: What are the Benefits of Using Greywater on Household Gardens
    We were curious if there would be any simple way to decrease water use in communities because of the ongoing drought in California. To do this, we would use three different types of greywater,...

    Keywords: conservationclimate changewater resources

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    Exploring multiple approaches to engage underrepresented students in research with natural history collections.
    The iDigBio team has leveraged natural history collections in a 3-pronged approach designed to engage undergraduates from underrepresented groups in collections-based research.

    Keywords: idigbionatural historynatural history museumsnatural history collectionsunderrepresented students

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    Data is the New Science
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

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    Biostatistics using R: A Laboratory Manual
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language to...

    Keywords: biostatisticsR programming language

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    Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced students
    University capstone projects can offer science students a rich research experience that illustrates the process of doing scientific research, and can also help students better choose future...

    Keywords: statisticsactive learningecologyinterdisciplinaryplantscommunicating sciencegroup workfield workproces of science

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    Using the IEDB to Predict Proteasomal Cleavage Events and T-cell Epitopes
    Research experiences provide a valuable view into the world of science and a great way to explore new fields and careers while developing critical thinking skills. The development and maintenance...

    Keywords: biologydatabaseImmunologydata sciencebioinformaticsBiotechnologyt-cellengineeringantibodyBioengineeringAntibody EngineeringlymphocytesProteinNetChopepitopeIEDBB-cellProteasomeProteasomal Cleavage

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    Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?
    Commercial antibodies to the SARS-CoV-2 spike protein have been successfully used to treat people with COVID-19. Unfortunately, as the SARS-CoV-2 virus evolves, new variants have appeared that can...

    Keywords: course based undergraduate research experiencesBLASTmolecular modelingSARS-CoV-2antibodyNextstrainiCn3DSequence alignmentStructure alignment

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    STEM Inclusive Teaching Practices Webinar Series: The Biocultural Labels Initiative
    The Biocultural (BC) Labels initiative is focused on accurate provenance, transparency and integrity in research engagements with Indigenous communities. ...

    Keywords: dataEquitynatural history museumsAttributionBiocultural LabelsTraditional Knowledge LabelsIndigenous data sovereigntyIndigenous rights

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    Ripped from the Headlines! Creating Case Studies from Primary Literature.
    Poster on using case studies developed from primary literature presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: case studyprimary literatureSummer Workshop 2018

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    Analyzing interesting images motivates mathematics and statistics learning
    Presentation by Jeremy Wojdak made as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

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    Introducing Immunology Research Literature to Understand B-cell Receptor Gene Expression
    Immunology is relevant to our everyday lives, driving a need for more engaging and inclusive undergraduate immunology education. One way to engage a diverse group of learners is by teaching them...

    Keywords: recombinationantibodyV(D)J recombinationB-cell receptorlymphocyte receptor

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    Conducting Biodiversity Science in the 21st Century (Poster)
    A poster summarizing how museum resources can be used for conducting biodiversity science in the 21st century including in research, education and in increasing inclusivity and diversity in STEM.

    Keywords: researchmuseumPosterBiodiversitynatural history museumsOpen Datadata literacydiversityinclusionBLUEdigitized natural history collectionsbiodiversity data

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    CUNEL - Connectomes for Undergraduate Neuroscience Education and Learning (RCN-UBE Introduction)
    The Connectomes for Undergraduate Neuroscience Education and Learning (CUNEL) project seeks to bring cutting-edge neuroscience methods into undergraduate classrooms and laboratories in order to...

    Keywords: RCN-UBE Introduction

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    Mental Health Opportunities for Professional Empowerment (HOPE) in STEM: Wellbeing, Support, and Social Connectedness
    The national conversation on the mental health, resilience, and well-being of graduate students has escalated across the higher education landscape. Within STEM disciplines, competition,...
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