You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

    1438

    views

    287

    downloads

    0

    comments

    0

    adaptations

    Antibiotic Resistance Genes Detection in Environmental Samples
    Our aim is to provide an authentic research experience for undergraduate students in a variety of biology courses through collaboration between a four-year university and a community college. This...

    Keywords: geneticsenvironmentmicrobiologyUndergraduateantibiotic-resistancePCRgel electrophoresisauthentic inquiry

    2068

    views

    419

    downloads

    0

    comments

    0

    adaptations

    An Introduction to Eukaryotic Genome Analysis in Non-model Species for Undergraduates: A tutorial from the Genome Consortium for Active Teaching
    Advances in Next Generation Sequencing (NGS) technology have led to development of many research methods for analyzing genomic data. Students studying biology at the undergraduate level must hone...

    Keywords: Speciationgenome evolutiongenetic variation

    2532

    views

    407

    downloads

    0

    comments

    0

    adaptations

    Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced students
    University capstone projects can offer science students a rich research experience that illustrates the process of doing scientific research, and can also help students better choose future...

    Keywords: statisticsactive learningecologyinterdisciplinaryplantscommunicating sciencegroup workfield workproces of science

    1696

    views

    467

    downloads

    0

    comments

    0

    adaptations

    Teaching Genetic Linkage and Recombination through Mapping with Molecular Markers
    Most introductory genetics courses cover genetic linkage, a core concept in the CourseSource genetics learning outcome framework. Although it is a classical genetics topic, genetic linkage remains...

    Keywords: meiosisphenotypegel electrophoresismicrosatellitesBanding PatternGenetic linkageInheritanceMolecular MarkersPhysical Linkage

    4303

    views

    1641

    downloads

    0

    comments

    0

    adaptations

    The Lecture-Free Classroom: Teaching students backward design and Bloom's Taxonomy to create their own learning environment
    We describe Presentation Enhanced Learning (PEL), a flexible, lecture-free, field-tested teaching format to promote problem-based, active learning in upper-division or graduate biological sciences...

    Keywords: active learningbackward designProblem based learningBloom's Taxonomy

    1118

    views

    2941

    downloads

    0

    comments

    0

    adaptations

    An Open Source, Collaborative Electronic Notebook for Undergraduate Laboratory Classes
    To overcome many of the limitations of the paper laboratory notebook (PLN), we developed an electronic laboratory notebook (e-LN) for the Dynamic Genome course at the University of California. The...

    Keywords: data collectionData annotationNotebook Skills

    1024

    views

    133

    downloads

    0

    comments

    0

    adaptations

    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate...

    Keywords: statisticsbioinformaticsRNAseqgene expressioncomputer programming

    3396

    views

    563

    downloads

    0

    comments

    0

    adaptations

    You and Your Oral Microflora: Introducing non-biology majors to their “forgotten organ”
    With limited time available for laboratory activities, introductory science courses for non-science majors typically use the laboratory period to reinforce material that was previously presented...

    Keywords: bacteriamicrobiomeBLASTmicrobesDNA replicationPolymerase chain reaction (PCR)

    2217

    views

    274

    downloads

    0

    comments

    0

    adaptations

    The Magic of Doctopus: A quick and easy way to deliver pre-named, pre-shared Google documents directly to your students’ Google drive
    Cloud-based applications, such as Google Docs, enable authors to collaboratively write and edit documents, spreadsheets, and other products.  Such collaborations can provide powerful learning...

    Keywords: metacognitiontechnologyGoogle Doc

    1416

    views

    131

    downloads

    0

    comments

    0

    adaptations

    The Case of the Missing Strawberries: RFLP analysis
    While solving the fictional mystery of the missing strawberries, students are engaged in a guided-inquiry lesson featuring small-group and class discussions, hands-on activities, and laboratory...

    Keywords: process of scienceDNAforensicsgel electrophoresisMolecular genotypingRestriction endonucleaseRestriction enzymeRestriction fragment length polymorphismRFLP

    2598

    views

    621

    downloads

    0

    comments

    0

    adaptations

    Bad Cell Reception? Using a cell part activity to help students appreciate cell biology, with an improved data plan and no loss in coverage
    With a veritable myriad of cell parts to cover, it is easy for educators to become locked into marathon presentations that become taxing for both the instructor and the students. While we hope and...

    Keywords: primary literatureprokaryotesCell partsEukaryotesOrganelle functionOrganelles

    1554

    views

    283

    downloads

    0

    comments

    0

    adaptations

    Choosing healthy data for healthy relationships: how to use 5-point summaries, box and whisker plots, and correlation to understand global health trends.
    This module utilizes a user-friendly database exploring data selection, box-and-whisker plot, and correlation analysis. It also guides students on how to make a poster of their data and conclusions.

    Keywords: Querying databasesgraphingRatiosdata typesstatistical learningcorrelationBox Plotsqbcchealth sciences education researchnutrition & food scienceUnderstanding ratesCreate graphsInterpret graphsinterpret tablesHealth ScienceConcepts in Statisticsexplaining statisticsusing statistics

    2535

    views

    1637

    downloads

    0

    comments

    0

    adaptations

    Phenology Trends and Climate Change in Minnesota (Project EDDIE)
    In this module, students will practice answering a specific question about how climate change has affected flowering date in American elm trees. Students can then practice on a species of their own...
    1011

    views

    213

    downloads

    0

    comments

    1

    adaptations

    Running the Same Pace During a Marathon
    This activity uses Algebra concepts for simple models using long distance running as an example.

    Keywords: NIMBiosAlgebraplottingSimple Equationsconverting unitsalgebra 1simple discrete equations

    1067

    views

    376

    downloads

    0

    comments

    0

    adaptations

    Modeling an Ironman Race
    In this activity students create a model that represents an Ironman race.

    Keywords: NIMBiosgraphsAlgebraSimple Equationsalgebra 1simple modelssimple discrete equations

    887

    views

    632

    downloads

    0

    comments

    0

    adaptations

    Calculating and Comparing Biodiversity Materials Across Sites Using NEON Herbaceous Vegetation Data - a Tutorial
    These materials are intended for use at the undergraduate level. They employ R and Excel software.
    5895

    views

    165

    downloads

    0

    comments

    0

    adaptations

    Bioinformatics: the Power of Computers in Biology – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.

    Keywords: NIBLSEGOBLET

    1040

    views

    263

    downloads

    0

    comments

    0

    adaptations

    Diseasebots HEXBUG Lab
    This module explores the effects of host density on contact rates and transmission of pathogens using a hands-on experiment with HEXBUG robots.
    735

    views

    165

    downloads

    0

    comments

    0

    adaptations

    Stream Discharge Module- Beck Modification (Project EDDIE)
    In this module, students use data from the United States Geologic Survey to assess changes in stream discharge with time, calculate flood frequency, and see the effects of urbanization and flood...

    Keywords: floodsProject EDDIEurbanizationstreams

    1361

    views

    600

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search