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    2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
    We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.

    Keywords: experimental designsystems biologyAssociation & Data Fittingreaction ratesdecay rates

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    Diseasebots
    This module explores the effects of host density on contact rates and transmission of pathogens or mutualist symbionts using a hands-on simulation, a computer agent-based model in NetLogo, and an...

    Keywords: NetLogoDisease ecologydensity dependenceSpreadsheethost-parasitemutualismOpen-inquiry group projectsmanipulative models (‘beanbag biology’)plotting

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    Transpiration
    In this lab, students will examine differences between C3 and C4 plants in their transpiration rates.

    Keywords: plant physiologybotanylaboratoryResource Type

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

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    2015-Heiko_Enderling-Integrating experimental data to calibrate quantitative cancer models
    For quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer...

    Keywords: cancertumorfittingagent-based

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    2009-Peter-Howard-Modeling With ODE
    This is a set of class notes rich in examples and ideas for modeling. There is some MatLab code in support of some of the activities.

    Keywords: ratescompetitionpopulationepidemicpendulumcarbon datingreaction chemistrymechanicsplanetary motiondrag racingHamilton’s methodvariational method

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    Aquatic Macroinvertebrates and Urbanization: Exploring urbanization’s effect on leaf litter decomposition in six streams of Puerto Rico using R
    Urbanization effects stream ecosystems by introducing pollutants to the streams.. This has detrimental effects on the life of the streams such as the aquatic macroinvertebrates who are in charge of...

    Keywords: aquatic macroinvertebratesStream ecologyurbanizationsurban runoff

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    Plate Tectonics: GPS Data, Boundary Zones, and Earthquake Hazards (Project EDDIE)
    Students work with high precision GPS data to explore how motion near a plate boundary is distributed over a larger region and hypothesize the area over which boundary-related earthquake hazards...
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    Diffusion Through a Cell Membrane
    This module introduces rates of diffusion in the context of understanding simple and facilitated diffusion through the cell membrane. It is intended for an introductory biology audience.

    Keywords: linear equationscalculushyperbolic equationsCellular Processesrates of change

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    Quantitative Cytological Characteristics: Photorespiration
    This module introduces quantitative cytological characteristics in the context of understanding cell behavior under stress. It is intended for an introductory biology audience.

    Keywords: plant physiologyRatioschart

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    Exploring the iNaturalist Database and Understanding Species Information
    This activity introduces a comprehensive guide aimed at enhancing users' proficiency in navigating the iNaturalist database to gain insights into biodiversity and species information. Divided into...

    Keywords: Biodiversityspecies descriptions#iNaturalistBLUEresearch skills

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    Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
    This Practical Guide outlines a number of basic bioinformatics approaches that can be used to understand the molecular basis of genetic diseases.
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    Bioinformatics: the Power of Computers in Biology – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.

    Keywords: NIBLSEGOBLET

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    Plant Defenses and Bioprospecting Mini-case Study
    This narrative mini-case study for use in undergraduate ecology courses reviews plant defense theory within the context of bioprospecting. Students learn about factors affecting plant defenses and...
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    Testing Goodness of Fit with the Chi-Square
    This is a MathBench module written for students to use in a self-study mode. It uses a narrative structure, humor, and everyday examples to step the learner through the mathematical principles...

    Keywords: Probabilitychi-squaredResources @ MathBench

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    1-005-NavigatingNumericalMethods-TechniqueNarrative
    This technique narrative is a discovery-based approach to learning the basics of numerical methods for first order differential equations, by following the graphical and analytical perspectives of...

    Keywords: Euler's methodTaylor's Methodsearch and rescueCoaast Guardlost at sealongitudelatitudelimit definition

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    Teaching the Biological Relevance of Chemical Kinetics Using Cold-Blooded Animal Biology
    This lesson plan was created to support non-chemistry major students in making connections between chemical kinetics and biological systems. Chemical kinetics is often viewed by students as an...

    Keywords: kineticsMetabolismEctothermPoikilotherm

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    CYTOSKELETON - Microtubule Dynamics in the Cell Cycle
    This module contains exercises designed to help upper-level cell biology students understand the dynamics of microtubule polymerization and depolymerization within the cell cycle and how cancer...

    Keywords: cell biologyQuantitative reasoningInterdisciplinary STEMInterpreting GraphsCytoskeletonScientific reasoningdimensional analysisNIQBC2. Data and GraphsC6. Quantitative LanguageC1. Numeracy

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    1-044-CollegeBound-ModelingScenario
    Preparing for four years of college for a friend of the family's newborn is the task. Making assumptions about costs, timing, interest rates, and fiscal capabilities are the order of the day.

    Keywords: interest ratecollege savingtuitionroom and board

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    COVID-19 Simulator (ISEE) Module
    This accessible module guides students through exploring the COVID-19 Simulator developed by ISEE. Students dig into the four scenarios provided (including the parameters and the graphs),...

    Keywords: mathematical modelingSTELLAInfectious Disease ModelingInterpreting Graphsinterpreting modelsCOVID19coronavirus

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