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    2017-Suebcharoen-Analysis of a Predator-Prey Model with Switching and Stage-Structure for Predator
    This paper studies the behavior of a predator-prey model with switching and stage-structure for predator.

    Keywords: stage structurepredatorpreybifurcationswitching

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    1-125-DiceyPopulation-ModelingScenario
    We offer students an opportunity to generate data for their team on a death and immigration model using 12 and 20 sided dice and then pass on the data to another student team for analysis with a...

    Keywords: simulationimmigrationdeathdice

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    2001-Tsoularis-Analysis of logistic growth models
    variety of growth curves have been developed to model both unpredated, intraspecific population dynamics and more general biological growth. We further review and compare several such...

    Keywords: logisticGompertzVerhulstPearl and ReedBertalanffy

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    2014-Andre_De Ross-Modeling Population Dynamics
    This course is intended as an introduction to the formulation, analysis and application of mathematical models that describe the dynamics of biological populations.

    Keywords: predator-preycompetitionpopulationgrowthbifrucationtext

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    1-142-WaterBottles-ModelingScenario
    This project involves the application of Newton's law of cooling to the study of insulated water bottles. Students have the option to conduct experiments with their own bottles outside of class or...

    Keywords: data collectionexperimenthalf-lifeNewton's Law of Coolingwater bottle

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    6-024-DronePackageDelivery-ModelingScenario
    Students will derive a system of first order differential equations which describe the flight path of a drone delivering a package.

    Keywords: VectorsTrigonometryFlightdronesparametric curveImproved Euler MethodRunge-Kutta

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    6-065-InternetPlatformUsers-ModelingScenario
    A model estimating the volume of users interacting through a two-sided Internet platform (allowing interaction of two types of users) will teach students how to analyze a 2-dimensional dynamical...

    Keywords: dynamicsflowconservedfixed pointscycletinternet platformdiverghenceJacobianattractingrepellingnodesstablesaddlespiral

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    4-035-ParEstSteadyState-ModelingScenario
    Students estimate parameters in a second order, linear, ordinary differential equations through analysis of the steady state solution. By applying a driver we can collect data in terms of the...

    Keywords: driversteady statesum of square errors

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    Data Analysis and Cancer
    This is a flipped classroom approach, students will learn the basic content about cell-signaling, p53, and transcription factors before class. During class students will focus on data analysis...

    Keywords: Resources @ HHMI - BioInteractiveBiochemistrymolecular biologydata interpretationBiological Data Analysiscell cyclemacromoleculesGenetic diseaseCell signaling

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    REMNet Tutorial, Excel Part 1: Accessing Your Microbiome Data 5.3.19
    Video on accessing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: data analysisREMNet

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    Bio 18: Statistics for Scientific Data Analysis
    Poster on the a data science course presented at the 2019 BioQUEST & QUBES Summer Workshop
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    Using Synthetic Biology to Teach Data Science
    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
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    Morphological, Anatomical and Molecular Analysis of Plant Phylogeny and Diversity
    In this lab, students perform phylogenetic analyses on morphological, anatomical and molecular data, and compare.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysisstele architecture

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    GSEAtheory
    Brief introduction to how gene set enrichment analysis works.

    Keywords: videosbioinformaticsgenomicsyoutubegsea

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    Protein Analysis
    This Excel workbook allows the analysis of sample or imported protein sequences. The model can analyze protein sequences up to 500 amino acids long.

    Keywords: Protein sequencehydrophobicity/hydrophilicity

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    Biostatistical Tools
    This Excel collection of workbooks has tools for: 1. Linear regression through the origin 2. Linear regression not through the origin 3. Polynomial fit 4. A simple chi-square analysis to test...

    Keywords: linear regressionchi-square analysisHardy-Weinberg equilibriumpolynomial regression

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    Learn genomics and bioinformatics through scientific thinking, creation and analysis (virtual and hands-on)
    Nucleic acid are biological molecules composed of nitrogen-containing bases, phosphate groups, and sugar molecules. The complimentary chemical bonding results in formation of double stranded DNA....

    Keywords: data analysisbioinformaticsnucleotidesproteinsRNAgenomicsScientific communicationscientific writingDNAmodelling scientific thinkinggenescientific thinkingcreation

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    2020-TeachingModule-ModelingSpreadOfOilSlick
    This is support material and video for teaching a Modeling Scenario using a first order ODE to model the spread of an oilslick with incomplete data.

    Keywords: moduleoil slickTeaching Module

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    Module M.4 Simple linear regression analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    Pedigree Unspoken Assumptions
    A video that highlights the unspoken assumptions that we use in pedigree analysis.

    Keywords: geneticsintroductory biologybiologybiology teachingVideoGenetics educationGeneral biology educationpedigreePedigree analysisassumptionsunspoken assumptionsskit

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