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    Food Chain Dynamics In A Simple Ecosystem
    In this lab, students will construct simple experiments with algae and brine shrimp to learn about food chains and population dynamics.

    Keywords: ecologyecosystemsfood chainalgaebrine shrimp

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    2016-Spayd-Puckett- A Three-Fold Approach to the Heat Equation - Data Modeling Numerics
    This article describes our modeling approach to teaching the one-dimensional heat (diffusion) equation in a one-semester undergraduate partial differential equations course.

    Keywords: separation of variablesexperimentheat equationLab Equipmentcollect data

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    Database Construction and Sampling
    Creating your own database is an excellent way for students to learn the trials and tribulations of data collection and management. Construction of three simple databases using a spreadsheet is...

    Keywords: databasesdata managementdata collectiondata ethicsdata integrity

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    Module M.4 Simple linear regression analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    2015-Beckmann-Sanchez-Cache Calculus-Modeling Caches through Differential Equations
    We present cache calculus, a technique that models cache behavior as a system of ordinary differential equations, letting standard calculus techniques find simple and accurate solutions of cache...

    Keywords: discretecachecache calculus

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    Running the Same Pace During a Marathon
    This activity uses Algebra concepts for simple models using long distance running as an example.

    Keywords: NIMBiosAlgebraplottingSimple Equationsconverting unitsalgebra 1simple discrete equations

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    Modeling an Ironman Race
    In this activity students create a model that represents an Ironman race.

    Keywords: NIMBiosgraphsAlgebraSimple Equationsalgebra 1simple modelssimple discrete equations

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    Bioinformatics: the Power of Computers in Biology – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces simple bioinformatics approaches for database searching and sequence analysis.

    Keywords: NIBLSEGOBLET

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    2013-Boscolo-Stellato-Undergraduate study of harmonic and parametric motion of a simple spring-mass system from motion waveforms
    In this paper, we describe a laboratory exercise that caters to beginning students while giving those with more background an opportunity to explore more complex aspects of the motion.

    Keywords: laboratoryexperimentspring massair frictionapparatuswaveforms

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    2009-Reid-King-Pendulum Motion and Differential Equations
    This article presents a relatively simple, real-world example that instructors can use in the classroom to let students explore the effect of simplifying assumptions on a model’s ability to reflect...

    Keywords: pendulumphysical pendulum

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    2003-Bohren-Dimensional analysis-falling bodies--fine art of not solving differential equations
    Dimensional analysis is a simple, physically transparent and intuitive method for obtaining approximate solutions to physics problems, especially in mechanics.

    Keywords: falling bodydimensional analysisdrag

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    1998-K_H_Louie_Clark-P_C_D_Newton-Analysis of differential equation models in biology-clover meristem populations
    A simple differential equation model (dynamical system) for clover, based on meristem numbers, is outlined and analysed mathematically.

    Keywords: sensitivity analysisstability analysissteady statesgrowing pointsbudsmeristems

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    2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
    Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological...

    Keywords: protein quality controlkineticsCellssteady statechemical kineticsfluouresencephotoactivationinytracellular

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    1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
    For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not...

    Keywords: sum of square errorsleast squarespharmacokineticslineteicscompartmental modelsdirect search

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    1988-EY_Rodin-N_Taber-Yeast Growth Modelling in a Laboratory
    Modeling simple growth with some missing data and doing linear regression for parameter estimation in closed form solution of differential equation model and data.

    Keywords: regressionyeastgrowth

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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

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    Spreadsheet Tutorial 3 - Column Graphs, Error Bars, and Standard Error of the Mean
    Generate a column or bar graph with standard error bars.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific MethodologyHigh School

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    Biostatistical Tools
    This Excel collection of workbooks has tools for: 1. Linear regression through the origin 2. Linear regression not through the origin 3. Polynomial fit 4. A simple chi-square analysis to test...

    Keywords: linear regressionchi-square analysisHardy-Weinberg equilibriumpolynomial regression

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    1-131-CaffeineElimination-ModelingScenario
    We model the concentration of caffeine eliminated from the human body at a rate proportional to the concentration. This is a ``first-order reaction'' in the language of pharmacokinetics -- the...

    Keywords: caffeineeliminationpharmacokineticsdrug

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    2015-G_Knott-Chemical Kinetics - Simple Binding F + G to and from B
    The study of this reaction, F + G goes to and from B, is common in chemistry and biochemistry. For example, F could be a hormone or drug and G the associated receptor sites.

    Keywords: bindingreactionchemical kineticsdeterministicBiochem Labsprobabilistickinetic reaction

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