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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio
    Access and clean an open source herbarium dataset using Excel or RStudio.

    Keywords: Exceldata in the classroomRStudiobiodiversity informaticsnatural history collectionsHerbariaData cleaning

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    Piwi Matters
    This case focuses on understanding structure and function relationships in Piwi, a protein that is critical for germline stem cell function and development of eggs in the fruit fly ovary.

    Keywords: Stem cellsmolecular visualization and analysis3D protein structure /function analysisPiwiPDBMolecular Case Study

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    Sickle Cell Disease Case Study
    A short film explores the evolutionary connection between an infectious disease, malaria, and a genetic condition, sickle cell anemia. The animation explores the genetic causes and biological...

    Keywords: HHMI BioInteractive

    2019

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    Climate Change Module (Project EDDIE)
    Students explore how climate is changing from the recent record. Produced by Project EDDIE.
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    National Ecological Observatory Network: A Data Source For Your Classroom
    Poster on NEON resources for use in research and education presented at the 2019 BioQUEST & QUBES Summer Workshop.

    Keywords: faculty mentoring networksNEONNational Ecological Observatory Network

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    The Effect of Climate Change on Butterfly Phenology - Intro Environmental Science
    In this module, students practice interpreting the relationship between variables before exploring changes in butterfly phenology through the use of natural history collections data.

    Keywords: ExcelResources @ ESA - TIEEgraphingquantitative literacyclimate changefmnphenologynatural history collectionsDIGbutterflyinterspecific interactions

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    Modification of "Exploring the population dynamics of wintering bald eagles through long-term data" module
    This module is a modification of the Beckstead et al. module in TIEE Volume 7. It includes a meta-cognition based model and self reflection, no statistics, and is organized to be done in 1-2...

    Keywords: Resources @ ESA - TIEEcase studypopulation ecologyendangered speciesconservation biologymigration ecology

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    Discrete Math Modeling with Biological Applications (Course Materials)
    These are the materials for Math 214 offered at Rhodes College.

    Keywords: labsagent-based modelingDiscrete Difference Equationsmatrix modelscoursebiomath coursedemonstrationin-class activitylab protocolproblem set

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    Food Chain Dynamics In A Simple Ecosystem
    In this lab, students will work with a simple algae/brine shrimp environment to learn about food chains and population dynamics.

    Keywords: ecologyecosystemsfood chainalgae

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    Phenotypic plasticity and predation
    Students predict changes to tadpole morphology and coloration after considering characteristics of the predator species and the prey themselves then test their own hypotheses (typically with...

    Keywords: RExcelimage analysisgraphingt-testsfrequency histogramsdata visualizationANOVAhypothesis formulationpredator-prey interactionsphenotypic plasticity

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    Investigating the effects of urbanization on bird biodiversity: Testing three biodiversity hypotheses using citizen science data
    Students generate predictions and test three hypotheses about how biodiversity is affected by urbanization over time using citizen science generated bird count data and land use data from 13...

    Keywords: hypothesis testingBiodiversityurbanizationguided inquiryland useproductivity hypothesisecosystem stress hypothesisintermediate disturbance hypothesis

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    Freezer Full of Fossils v2.0
    The Long Term Evolution Experiment started by Dr. Richard Lenski provides a rich dataset to help students explore concepts of fitness, replication, and adaption.

    Keywords: graphingfitnessadaptationcompetitionSpreadsheet

    1995

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    Food Chain Dynamics In A Simple Ecosystem
    In this lab, students will construct simple experiments with algae and brine shrimp to learn about food chains and population dynamics.

    Keywords: ecologyecosystemsfood chainalgaebrine shrimp

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    Exploring the population dynamics of wintering bald eagles through long-term data
    Practice module included in Teaching Issues and Experiments in Ecology (TIEE) Volume 7

    Keywords: Resources @ ESA - TIEEcase studypopulation ecologyendangered speciesconservation biologymigration ecology

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    Food Chain Dynamics In A Simple Ecosystem
    In this lab, students will work with a simple algae/brine shrimp environment to learn about food chains and population dynamics.

    Keywords: ecologyecosystemsfood chain

    1974

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    Implementing an online module about tropical seed dispersal and restoration in an undergraduate ecology course in the Pacific Northwest, USA
    This “Spreading Seeds” case study introduces students to ecology of seed dispersal mutualisms, and their importance for forest restoration. The implementation plan teaching notes, and associated...

    Keywords: mutualismRestoration Ecologyspecies interactionHabitat fragmentationSeed dispersalforest recovery

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    A rainforest with a gold chain? The impacts of gold mining on the trophic web of an Amazonian rainforest of SE Peru
    The use of mercury in artisanal gold mining affects aquatic and terrestrial food webs in the Peruvian Amazon. Learn about bioaccumulation, explore data on mercury deposition in vegetation and how...

    Keywords: conservation biologydeforestationhuman healthpollutionbiodiversity losstropical land use

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    SOAR - San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research to enhance STEM education and assess human impacts on avian biodiversity (RCN-UBE Introduction)
    The San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research (SOAR) brings together faculty, students, and volunteers to implement an experiential learning and...

    Keywords: RCN-UBE Introduction

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    Science Behind the Lesson: It's a Bird! It's a Plane! It's Biomechanics!
    Active flight is a specialized mode of movement found in insects, birds, and mammals. The anatomy, morphology, physiology, and ecology of flying taxa has changed over evolutionary time. Researchers...

    Keywords: EvolutionecologybatphysiologyAnatomybiomechanicsbirdFlightinsect

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    Cold blood and wet skin in hot and dry secondary forests. How do amphibian traits determine persistence in secondary forests?
    Students will synthesize information from biological and physiological traits of amphibians and characteristics of secondary forests in the tropics to form hypotheses about persistence of...

    Keywords: life historyconservation biologyphysiological ecologyamphibianland use changeEctothermsecondary foresttrait-based ecology

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