You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    AVIDA exercise on the role of mutation in evolution
    A tested exercise at the college freshmen level using AVIDA-Ed to generate and test a hypothesis about the relationship between mutation rate and the probability of evolving a useful function in...
    959

    views

    69

    downloads

    0

    comments

    0

    adaptations

    Drivers of Avian Local Species Richness: Continental-Scale Gradients, Regional Landscape, or Local Land Cover?
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 8

    Keywords: ecologyResources @ ESA - TIEEspecies richness

    1314

    views

    187

    downloads

    0

    comments

    0

    adaptations

    Avida-ED presentation: Context Dependent Fitness
    Avida-ED presentation

    Keywords: fitnessadaptationcontext-dependenceavida-edenvironmentin-class activity

    1082

    views

    176

    downloads

    0

    comments

    0

    adaptations

    Painting turtles: an introduction to species distribution modeling in R
    This module uses R software to introduce students to the process of accessing databases and building species distribution models based on occurrence records.

    Keywords: RResources @ ESA - TIEEfmnDIGspecies distributionshabitat suitabilitycooperative learningjigsaw

    3115

    views

    929

    downloads

    0

    comments

    0

    adaptations

    An Interactive Protocol for In-Classroom DNA Extraction
    Using commonly available materials, this tool allows students to extract DNA, exploring DNA chemistry and the principles of experimental design and execution. We take a “Choose Your Own...

    Keywords: geneticsDNAbiochemical structure and function

    1926

    views

    191

    downloads

    0

    comments

    0

    adaptations

    Building Trees: Introducing evolutionary concepts by exploring Crassulaceae phylogeny and biogeography
    Teaching evolutionary theory is foundational for all biological sciences and a key aspect of overall science literacy. The conceptual framework for understanding evolution relies on thinking...

    Keywords: EvolutionphylogeneticsTree thinkingbiogeography

    2658

    views

    988

    downloads

    0

    comments

    0

    adaptations

    Exploration of the Human Genome by Investigation of Personalized SNPs
    Students often shy away from tedious bioinformatics approaches to exploring their genomes. However, in our expanding digital world these skills are some of the most relevant and valuable. To...

    Keywords: UCSC genome browsersingle nucleotide polymorphismGenome wide association studiesGenomic organization

    1888

    views

    846

    downloads

    0

    comments

    0

    adaptations

    Concept mapping exercise for ecological news story and peer feedback
    This activity is designed for small groups to work together in class to create a concept map based upon an ecological news story. Any short news story can be selected. One is provided here, along...

    Keywords: ecologysystems thinkingconcept mappingpeer feedbackin-class exercise

    287

    views

    74

    downloads

    0

    comments

    0

    adaptations

    Comparing Primary and Secondary Forest in a Preserve in Plano Texas: A Forest Ecology Course-based Undergraduate Research Experience (CURE) for Non-Majors and Lower-Level Majors
    An activity that can be conducted as an online or field exercise in which students develop and test their hypotheses about how forest stand characteristics differ between two forest types.

    Keywords: forest ecologyecologycourse-based undergraduate research experienceUsing Excel

    1956

    views

    553

    downloads

    4

    comments

    0

    adaptations

    Exploring the evolution of caffeine biosynthesis enzymes
    Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1659

    views

    522

    downloads

    0

    comments

    0

    adaptations

    Introduction to Genome Annotation
    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    Keywords: microbiologyGenome annotationBioinformatics EducationBioinformatics and Genomics

    1894

    views

    601

    downloads

    0

    comments

    0

    adaptations

    Mars Colony
    In this exercise students work in groups to design an agroecosystem to feed a Mars Colony while accounting for space and energy transfer limitations.

    Keywords: SimBioResources @ SimBio

    1192

    views

    373

    downloads

    0

    comments

    0

    adaptations

    Island Frogs
    This is an exercise in island biogeography that allows students to reconstruct splits in the evolutionary history of several hypothetical frog species.

    Keywords: Resources @ SimBio

    1093

    views

    419

    downloads

    0

    comments

    0

    adaptations

    Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis
    in this exercise students will make suggestions for designing a comprehensive research program, use survey data, critically analyze results, and devise methods for study.

    Keywords: case study

    1418

    views

    312

    downloads

    0

    comments

    2

    adaptations

    Wolf Sheep Predation Simulation Exercise
    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    Keywords: simulationecologyIntroductoryNetLogoagent-based modelingagent-based modelLabbioinformaticspredator-preyUndergraduateNIBLSEInstructional SettingAudience LevelActivity LengthLess than 1 hoursimulation cycleC1. Role of bioinformaticsC6. ModelsReviewed at NIBLSEagent based modleing

    2713

    views

    494

    downloads

    0

    comments

    0

    adaptations

    Speed Data Science
    Data visualization is a foundational data science skill. One way to help students begin to learn about data visualization is to tap in to their innate creative instincts. This activity can be used...

    Keywords: data visualizationdata science educationlife sciences

    184

    views

    89

    downloads

    1

    comments

    0

    adaptations

    Curvature and Maximum Permissible Speeds
    In this activity students will compute the curvature of a section of commuter rail and use it to determine a safe speed at which a train should can round the corner without tipping or derailing....

    Keywords: data analysiscalculusnumerical approximationengineeringcalculus 3transportation

    459

    views

    418

    downloads

    0

    comments

    0

    adaptations

    1-013-SleuthingWithDifferentialEquations-ModelingScenario
    We present several situations in which differential equation models serve to aid in sleuthing and general investigations.

    Keywords: projectile motionaccelerationNewton's Law of Coolingspeeding

    281

    views

    147

    downloads

    0

    comments

    0

    adaptations

    1-068-WaterBottleCooling-ModelingScenario
    Students create of a differential equation describing how fluid in a water bottle will change its temperature to approach the ambient temperature in a room.

    Keywords: bNewton's Law of Coolingwater bottleautonomousbottle

    209

    views

    126

    downloads

    0

    comments

    0

    adaptations

    CyVerse: Scalable Image Informatics
    Poster on cyberinfrastructure for the machine learning ere presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: image analysisundergraduate researchmachine learningCyVerse

    1081

    views

    257

    downloads

    3

    comments

    0

    adaptations

    Close

    Home

    Search