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    2020-Teaching Module-Applying Separation Of Variables
    This is one of several Teaching Modules prepare by the Principal Investigates of SIMIODE’s National Science Foundation grant and offered in 2020. The material offered is a complete narrative of how...

    Keywords: modulesEbolaseparation of variablesTeaching ModulesSeparation

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    2010-Soetaert-EtAl-Solving Differential Equations in Rd SIMIODE Draft (5)
    Here we give a brief overview of differential equations that can now be solved by R.

    Keywords: solving

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    2018-Chris McCarthy-Newtons Law of Cooling
    You have hot water (initial temperature ) in a container, say a cup or glass. The temperature in the room is cooler, say a constant degrees Celsius. Come up with a differential equation that models...

    Keywords: datawaterNewton's Law of Coolingcooling

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    1990-Winkel_Brian-First-year_calculus_students_as_in-class_consultants
    We demonstrate how we use traditional text book calculus problems to involve first year calculus students as consultants. Students are asked to solve a “real world” problem after interviewing a...

    Keywords: optimizationcalculusConsultantprinterclient

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    2016-Simon_Malham-Differential_Equations_and_Linear_Algebra
    This is a nice set of notes on which a course can be based. There is ample material on first and second order, linear systems, and Laplace Transform methods for setting up and solving differential...

    Keywords: textbooklinear algebraLaplace transform

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    Pesticide-Driven Bee Mortality: An Introduction to Survival Analysis in R
    In this lesson, students will receive an introduction to survival analysis in R utilizing data on bee mortality caused by pesticide exposure. In their code, students will assess survivability,...

    Keywords: chi-squaredsurvivalbeespesticidesRoundupsurvival analysissurvival plotsherbicides

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    1-047a-CondensationOptimization-ModelingScenario
    We seek to optimize a condensation process which is modeled by a simulation using the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top...

    Keywords: simulationdataoptimizationenergycondensationbest fitcostsum of scquare errors

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    One-way ANOVA in R with swirl
    One-way analysis of variance (ANOVA), following the text in Chapter 5 of Beckerman et al. (2017) Getting started with R: an introduction for biologists, 2nd edition.

    Keywords: R programming languageANOVAggplot2Swirl

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    Investigating Biomes with BiomeViewer
    This interactive classroom activity facilitates student learning about biodiversity through an investigation of biomes (what they are, how they're defined, their global distribution) using a free...

    Keywords: BiodiversityEcosystem EcologyBiomeViewerbiomes

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    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

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    Marsh Madness: Using Video Games and a Case Study to Explore Food Webs and Ecosystem Services in Carpinteria Salt Marsh Reserve
    As the complexity and interconnectedness of our world increases, we are continually expected to be capable of complex, non-linear thinking in order to successfully tackle and solve the challenges...

    Keywords: food webssystems thinkingGame Based LearningEcosystem Servicessocio-ecological networks

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    A Remote-Learning Framework for Student Research Projects: Using Datasets to Teach Experimental Design, Data Analysis and Science Communication
    Remote learning often requires an alternative to hands-on, student-designed research projects. To this end, we created a package of scaffolded assignments to support introductory students through...

    Keywords: population growthphysiologyecotoxicologyphotosynthesis

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    Before You Start Publishing on QUBES
    This handy guide follows the Instructions for Authors to keep together all the text that can then be copied during the publication process. Notes and comments in this document are italicized so...

    Keywords: QUBESOERpublish on QUBESpublish

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    Application of a Bacterial Experimental Evolution System to Visualize and Teach Evolution in Action: A Course-Based Undergraduate Research Experience
    Concepts of evolution are typically taught through examples of extremely long timescales, which do not always resonate broadly. Here, we describe a course-based undergraduate research experience...

    Keywords: EvolutionmutationcompetitionNatural Selectionregulationstructure and functionreproductive fitnessgenotype to phenotypehomologs

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    Online Adaptation of the Cell Engineer/Detective Lesson
    One of the most fundamental themes of biology is the relationship between structure and function, which is particularly evident when it comes to cells; however, the traditional cartoon depictions...

    Keywords: cell functionCell StructureOrganelles

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    How to Design a Classroom Activity that Integrates 3D Print Models with Active Learning
    Student exploration of relevant physical models can deepen knowledge of course material. In this guide we describe a method by which instructors can integrate 3D printing technology with an...

    Keywords: active learning3D print modelsclassroom jigsaw

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    GMC: Genes, Mutations and Cancer - Group Concept Map Development
    It has been shown that active learning strategies used in the classroom can increase student learning and retention of information. We generated an active learning exercise that can be used in the...

    Keywords: mutationcancerCell Division

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    Moths and Frogs and E. coli, Oh My!: Agent-based Modeling of Evolutionary Systems
    In evolution classrooms, introducing and reinforcing the idea of genetic drift and random selection can be challenging, as can be reinforcing appropriate mental models of evolution. Agent-based...

    Keywords: modelingEvolutionecologyagent-based modelingGenetic Driftenvironmental scienceNatural Selectioncompetitive coevolutionsimulation modelingevolutionary reasoning

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    Venom: To Kill or Cure?
    In this case study, students will explore concepts of evolution, protein structure and function, taxonomy, and methods of scientific inquiry in a real-world way.

    Keywords: EvolutionphylogeneticsidigbioAP Biologytaxonomynatural history collections3D modelsoVertVenomsnakesherps

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    2009-Das-EtAl-Bioeconomic harvesting of a pre-predator fishery
    This paper deals with the problem of non-selective harvesting of a prey–predator system by using a reasonable catch-rate function instead of usual catch-per-unit-effort hypothesis.

    Keywords: predator-preyharvestingPontryagin’s maximum principlebioeconomicbionomic equilibriumbiotechnical productivitycatch-rate functionoptimal equilibrium

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