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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Syllabus and Resources
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy data

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    Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBIplant biologyNIBLSEalgorithmsincubatorsPlant and Fungal EvolutionBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogram

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

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    LearnR Apps
    Presentation on using the LearnR software in teaching. Presented at the 2021 BIOME Institute

    Keywords: mathematicsRStudioformulascomputer programming2021 BIOMEparson's problems

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    Engaging students in data exploration using digital biodiversity databases: BLUE Data Network
    Slides for BLUE presentation at 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: undergraduate researchnatural historyBiodiversitynatural history collectionsbiodiversity collectionsBLUEbiodiversity literacy

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    The Evolution (and Coevolution) of Flowering Plants
    Module on coevolution developed by AIM-UP. In the module students utilize natural history collections.

    Keywords: moduleResources @ AIM-UP!Coevolutionpollination biologynatural history collections

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    Plants by the Numbers
    Session presentation on quantitative botanical activities at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: Simulationsplantsfmnquantitative botanicsflipped labshypothesis driven laboratoriesSummer Workshop 2018

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    Evaluating Representation in Science Through a Peer-Reviewed Research Study
    The demographic representation of scientists featured in biology curricular materials do not match that of the undergraduate biology student population or of the U.S. population. In this lesson, we...

    Keywords: societyRepresentationSTEM equity

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    Building an Inclusive Botany - Structuring in Class Discussions
    Driven by the national conversation on systemic racism, ongoing inequities, appeals to decolonize science, and the many recent calls for diversity, equity, accessibility, and inclusion, we use...

    Keywords: botanyplant sciencediversityAccessibilityHistory of Sciencetraditional knowledgeCommunityScienceColonialismSpecimen Digitization

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    1975-DH_Griffel-Teaching the formation and solution of differential equations
    This paper raises many interesting questions about teaching the formation (and solution) of differential equations, i.e. modeling with differential equations.

    Keywords: parasitesTopographypopulationepidemictraffic flowsocial interactionsfish weightarms race

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    5-080-SpaceFlightRecolonize-ModelingScenario
    This project is a combination of differential equations, multi-variable calculus, and vector calculus with use of technology to model colonization of a new planet. Students solve a system of...

    Keywords: optimizationsum of square errorsvector calculusLagrange multipliersline integrals

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    Case Study — World records as measures of senescence or randomness
    This is a project meant to accompany the Case Study that Carl Bergstrom, which uses R to explore whether declining track and field world record performance could be an artifact of sample size (less...

    Keywords: RRStudioprogrammingsampling distributionProbability & Statisticsrandomnesscontinuous probability distribution

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    Why Cells Change Weight: Demonstrating Linear Regression Through an Osmosis Experiment
    In this activity, students will perform an experiment utilizing dialysis tubing to create cellular models to demonstrate the linear relationship between cell weight and time in varying tonicities....

    Keywords: graphingqbccCellular and Molecular BiologyInterpret graphsConcepts in Statistics

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    Teaching about fatherless snakes in a prison classroom
    Developing a course for the first time as a graduate student is challenging. When I first taught introductory biology with the Cornell Prison Education Program, I struggled to design and adapt...

    Keywords: meiosismitosisReproduction

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    2014-William_Trench-Elementary_Differential_Equations-Books_and_Monographs
    This is the most widely cited and referenced free online text for differential equations and is very complete. These two books are exactly what they say they are.

    Keywords: differential equationstextbook

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    A "How-to" Guide For Producing Recorded Interviews
    Now that almost every student carries a camera in their pocket, student-created digital media items can be used to supplement curriculum material and as assessment. Although students can easily...

    Keywords: communicationemployabilitygathering data

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    A Hybrid Virtual Kinesiology Laboratory Module for Human Anatomy and Physiology
    The integration of virtual technology is becoming a common trend in anatomy education at the undergraduate and graduate levels. The incorporation of virtual 3D anatomical models into the classroom...

    Keywords: kinesiologyexercise physiologyAnaerobic RespirationMaximum Oxygen ConsumptionMuscular SystemVirtual AnatomyWingate Test

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    Using Alternative Assessments: IGELS Tools, Tips, & Strategies to Enhance Undergraduate Biology for Non-majors
    Alternative assessments focus on learning outcomes and engage students with metacognitive reasoning.​ This workshop session provides an introduction to designing and using rubrics as alternative...

    Keywords: NABT 2022IGELS

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    Are you teaching biostatistics with R? Suggestions to help you as work with your students.
    Teaching students how to code and analyze data in R is important for the fields of biology and ecology. Olivia Tabares and the Ecological Forecasting Education Working Group created this resource...

    Keywords: biostatisticsecologybiologyR code

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    Tutorial Combination and Assessment
    The tutorial adaptation specifically addresses data types (i.e., numeric versus categorical variables) and the types of graphs that are used to summarize the different data types.

    Keywords: Scientific ProcessStatistics and MathScientific Methodology

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