You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Biobyte 4 - The role of data science principles and practices in undergraduate biology
    This short activity was an effort to launch a community conversation around the interface of data science principles and practices and undergraduate biology education. A variety of resources,...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

    1027

    views

    570

    downloads

    0

    comments

    0

    adaptations

    NSF RCN-UBE SCORE Pre-Data Summary Report
    Evaluation findings of the SCORE Pre-Summit Survey with participant demographics.

    Keywords: evaluationSTEM Evaluation

    876

    views

    221

    downloads

    0

    comments

    0

    adaptations

    Counting the Forest and the Trees: Quantitative Undergraduate Biology Education and Synthesis (QUBES) is a tool for Vision and Change
    Presentation focusing on how QUBES plans to improve learning opportunities for all students enrolled in undergraduate biology courses, presented at Botany 2015.

    Keywords: QUBEScommunityconferencedigital tools

    1420

    views

    64

    downloads

    0

    comments

    0

    adaptations

    Videos on Java for courses at University of Tennessee
    Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga

    Keywords: videosjavabioinformaticsgenomicsyoutube

    1216

    views

    123

    downloads

    0

    comments

    0

    adaptations

    Java for-loop, investment problem, with debug flag usage demo
    BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.

    Keywords: videosjavabioinformaticsgenomicsyoutubeBig Java

    1211

    views

    277

    downloads

    0

    comments

    0

    adaptations

    Screen Casts for Foundations of Bioinformatics at UCSD
    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213

    Keywords: videosbioinformaticsgenomicsyoutubescreen cast

    1051

    views

    117

    downloads

    0

    comments

    0

    adaptations

    How do we do Bioinformatics?
    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    Keywords: bioinformaticsgenomicsyoutubescreen cast

    995

    views

    237

    downloads

    0

    comments

    0

    adaptations

    What is Bioinformatics?
    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

    Keywords: videosbioinformaticsgenomicsyoutubescreen castintroductory bioinformatics

    1133

    views

    248

    downloads

    0

    comments

    0

    adaptations

    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    Keywords: bioinformaticsgenomicsyoutubescreen cast

    1098

    views

    239

    downloads

    0

    comments

    0

    adaptations

    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    Keywords: videosbioinformaticsproteinsgenomicsyoutubeprotein physiochemistryExPasy ProtpramSOSUI serverPSortB

    1111

    views

    314

    downloads

    0

    comments

    0

    adaptations

    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

    1026

    views

    223

    downloads

    0

    comments

    0

    adaptations

    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

    1153

    views

    235

    downloads

    0

    comments

    0

    adaptations

    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

    1264

    views

    250

    downloads

    0

    comments

    0

    adaptations

    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

    1575

    views

    232

    downloads

    0

    comments

    0

    adaptations

    Fostering and sustaining interdisciplinary faculty communities around undergraduate teaching: Insights from the QUBES project
    Presentation part of a minisymposium at the SIAM Applied Mathematics Education (ED18) conference, "Communities of Practice for Math Modeling Education"

    Keywords: SIAMapplied mathematicsfaculty communities

    1122

    views

    56

    downloads

    0

    comments

    0

    adaptations

    QUBES: An education gateway for professional development, OER sharing, and project support
    Poster about QUBES as an education gateway presented at the 2019 ASCN Transforming Institutions

    Keywords: cyberinfrastructureeducation gateway

    1311

    views

    414

    downloads

    0

    comments

    1

    adaptations

    Expanding Undergraduate Participation in Computational Biology: Resources and Lessons Learned from a Hands-on Workshop
    Presentation on computational biology in undergraduate education at the 2019 Great Lakes Bioinformatics Conference

    Keywords: undergraduate educationcomputational biologybioinformatics

    1350

    views

    258

    downloads

    0

    comments

    0

    adaptations

    Findings from S-JEDI Learning Community Post-Survey
    Summary of findings of the Summer 2020 S-JEDI Learning Community Post-Survey

    Keywords: evaluationscore

    1117

    views

    293

    downloads

    0

    comments

    0

    adaptations

    NSF RCN-UBE SCORE Mid-Survey Findings
    Network findings for the SCORE Network Mid-Survey.

    Keywords: evaluationscoreSTEM Evaluation

    969

    views

    236

    downloads

    0

    comments

    0

    adaptations

    QUBES: A vision of community collaboration in teaching and learning in quantitative biology
    Presentation about new projects QUBES is pursuing and how to get involved. Presented at the Seventh International Symposium on Biomathematics and Ecology: Education and Research 2014, Claremont, CA.

    Keywords: QUBESquantitative biologyteaching

    1478

    views

    247

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search