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    BIO 439/539: Big Data Analysis
    Course materials for BIO 439/539: Big Data Analysis
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    BIO 181G: The information age
    Course materials for BIO181G: The information age
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    Trout modeling example
    This is an open-ended modeling example using difference equations and Algebra II skills.

    Keywords: population biology

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    Citations
    Published Avida-Ed article
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    Avida-ED presentation: Context Dependent Fitness
    Avida-ED presentation
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    adaptations

    Avida-ED User Manual
    Basic User manual to use Avida-ED
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    Marriage Model (with errors)
    Marriage age model for use with NetLogo and ABM material
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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Exercise 10 [Elevation]
    Supplemental data for ABM
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    List of models in which observed patterns are Important
    Supplemental material for ABM
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    Mutation and Selection: An Exploration of Antibiotic Resistance in Serratia Marcescens
    This laboratory module gives students hands-on experience with mutation and selection in bacteria.
    1209

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    Avida-ED
    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method.
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    Facial Bones
    Information about the many different facial bones.
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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM
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    Breeding synchrony in colonial birds: from local stress to global harmony
    This is a supplemental resource for ABM
    1187

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    NetLogo refresher course
    This is a supplemental resource from ABM
    1015

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    199

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    adaptations

    Marriage age model ODD
    Supplemental resource from ABM
    1082

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    Measuring the Health of the Earth Using the Theory of Island Biography
    This module uses a variety of available datasets to explore methods of calculating biodiversity and measuring landscape as well as the relationship between those.
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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Section 5.5 [Elevation]
    Elevation data input file for Section 5.5 (tab-separated plain text).
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    Carbon Footprint: A Study of Unit and Dimensions
    In this module, we integrate the context of carbon emission and human consumption into an introductory lesson on units and estimation.
    910

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    The ODD protocol: A review and first update
    The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).
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