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    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
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    Video Tutorials for Computational Genomics
    YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.
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    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.
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    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).
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    NCBI Overview
    An overview of some of the databases within NCBI and how to get FASTA sequences.
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    UniProt
    Brief description of UniProt and its databases and features
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    GSEAtheory
    Brief introduction to how gene set enrichment analysis works.
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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.
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    What is bioinformatics?
    Short description of what bioinformatics is, it's potential applications, and what it is not.
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    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.
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    Fostering and sustaining interdisciplinary faculty communities around undergraduate teaching: Insights from the QUBES project
    Presentation part of a minisymposium at the SIAM Applied Mathematics Education (ED18) conference, "Communities of Practice for Math Modeling Education"
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    Investigating the footprint of climate change on phenology and ecological interactions in north-central North America
    The module was used in lab following lecture material on pairwise interactions in ecology (emphasizing consumption, competition, mutualism), and parallel to community ecology (emphasizing food web...
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    Global Temperature Change in the 21st Century
    This module was used as an introduction to the science of climate change, with the goal of detecting trends in temperature change providing motivation for later course material on climate...
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    A Pipeline in Paradise
    I incorporated fracking into the case study instead of just focusing on building a pipeline, which allowed us to discuss fracking with this case study.
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    Phylogenetic analysis using collections material: interpreting trait evolution by comparison of morphological and molecular genetic hypotheses
    Exercise spans two weeks, includes homework, and involves some groups of animals as well as plants. Emphasizes re-interpretation of morphological trait evolution following molecular genetic...
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    Food Chain Dynamics In A Simple Ecosystem
    In this lab, students will work with a simple algae/brine shrimp environment to learn about food chains and population dynamics.
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    A Structured Inquiry Approach to Cotyledon Phenotyping
    In this lab, students will work with messy data to try to answer the question “How do plants inherit cotyledon color?”
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    Terrestrial Trophic Cascades & Population Structure
    In this activity, students will use data from natural parks to examine trophic cascades.
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    Morphological and Molecular Analysis of Plant Phylogeny and Diversity
    In this lab, students perform phylogenetic analyses on morphological and molecular data, and compare.
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