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  1. A Quick Guide to Teaching R Programming to Computational Biology Students

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    03 Jun 2015 | Teaching & Reference Material | Contributor(s): Stephen Eglen

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/838An introduction from an experienced educator in teaching R to computational biology graduate students. Contains information that is relevant for the undergraduate classroom...

  2. A very basic tutorial for performing linear mixed effects analyses: Tutorial 2

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    24 Apr 2015 | Teaching & Reference Material | Contributor(s): Bodo Winter

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/833This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models. This text is different from other introductions by being decidedly...

  3. BioRadiant

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    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

  4. Collecting and analyzing binomial data

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    15 Jul 2020 | Software (On-site) | Contributor(s): Suann Yang, Darcy Taniguchi, Jenny Hazlehurst

    In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.

  5. Cookbook for R

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    10 Jan 2015 | Teaching & Reference Material | Contributor(s): Winston Chang

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/780The goal of the cookbook is to provide solutions to common tasks and problems in analyzing data.

  6. Course materials for computational genomics using R

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    19 Nov 2015 | Teaching & Reference Material | Contributor(s): Hong Qin

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/907The R code and data are deposited at Github: https://github.com/hongqin/RCompBio 

  7. Data Analysis for the Life Sciences

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    25 Sep 2015 | Teaching & Reference Material | Contributor(s): Rafael A Irizarry, Michael I Love

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/841An online stats book written completely in R!From the authors:"Data analysis is now part of practically every research project in the life sciences. In this...

  8. DataCamp

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    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/913The Easiest Way to Learn Data Science OnlineMaster data analysis from the comfort of your browser, at your own pace, tailored to your needs and expertise. Whether...

  9. Ecology and Epidemiology in R

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    09 May 2015 | Teaching & Reference Material

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/837

  10. Free Introduction to R Course at DataCamp

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    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/914In this introduction to R, you will master the basics of this beautiful open source language, including factors, lists and data frames. With the knowledge gained in this...

  11. GENI-ACT

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    24 Jan 2016 | Software (Off-site)

    GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....

  12. Google Charts Example - Bubble

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    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  13. Introduction to Probability, Statistics, and Random Processes

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    07 Nov 2016 | Teaching & Reference Material | Contributor(s): Hossein Pishro-Nik

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/896Check out the textbook called Introduction to Probability, Statistics, and Random Processes by Hossein Pishro-Nik. From the website: "It is an open access...

  14. IPMpack: an R package for Integral Projection Models

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    19 Jan 2015 | Software (Off-site) | Contributor(s): C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...

  15. Linear models and linear mixed effects models in R: Tutorial 1

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    24 Apr 2015 | Teaching & Reference Material | Contributor(s): Bodo Winter

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/832Linear models and linear mixed models are an impressively powerful and flexible tool for understanding the world. This tutorial is the first of two tutorials that introduce...

  16. Performing a Population Viability Analysis from Data Students Collect on a Local Plant

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    23 Sep 2015 | Teaching & Reference Material | Contributor(s): Noah Chamey, Sydne Record

    This resource has been updated - find the current version here: https://qubeshub.org/publications/264During two lab periods, students collect demographic data on perennial plants and then use these data in a matrix model to perform population viability analyses. During the first lab,...

  17. R Commander

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    04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar

    R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.

  18. R for biologists

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    18 May 2015 | Teaching & Reference Material | Contributor(s): Marco Martinez

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/815An introductory guide to data analysis in R for life sciences researchers.

  19. R Reference Card

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    02 Sep 2015 | Teaching & Reference Material | Contributor(s): Tom Short

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/840by Tom Short, EPRI PEAC, tshort@epri-peac.com 2004-11-07Granted to the public domain. See www.Rpad.org for the source and latest version. Includes material from R...

  20. R Shiny App Example

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    09 May 2018 | Software (On-site) | Contributor(s): Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

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