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A Critical Guide to the UniProtKB Flat-file Format
05 Dec 2020 | Teaching Materials | Contributor(s):
By Teresa Attwood1, GOBLET Foundation
The University of Manchester, Manchester, UK
This Critical Guide briefly presents the need for biological databases and for a standard format for storing and organising biological data.
A Critical Guide to the PDB
This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.
A Critical Guide to Unix
04 Dec 2020 | Teaching Materials | Contributor(s):
By Teresa Attwood1, GOBLET Foundation2
1. The University of Manchester, Manchester, UK 2. Global Organisation for Bioinformatics Learning, Education & Training
This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....
Building Community-Based Approaches to Systemic Reform in Mathematical Biology Education
03 Sep 2020 | Teaching Materials | Contributor(s):
By Olcay Akman1, Carrie Diaz Eaton2, Dan Hrozencik3, Kristin Jenkins4, Kaci Thompson5
1. Illinois State University 2. Bates College and QUBES 3. Chicago State University 4. BioQUEST 5. University of Maryland
This is an open access article from Bulletins in Math Bio.
Sizes, Scales, and Specialization: An activity highlighting the diversity in cell types
04 Jul 2020 | Teaching Materials | Contributor(s):
By Heather Seitz1, Jillian Marie Miller2, Joseph Esquibel3
1. Johnson County Community College 2. Roane State Community College 3. Lansing Community College
This module explores how cell size and shape varies across cell types in the human body by having students calculate relative proportions of numbers in scientific notation.
How does increasing atmospheric carbon dioxide disrupt ecological systems? Results from FACE experiments across the globe.
12 Jun 2020 | Teaching Materials | Contributor(s):
By Courtney Campany
This module synthesizes key findings from forested CO2 enrichment experiments over the last 3 decades. Students should have a basic working knowledge of climate change, ecosystem nutrient cycles...
Caribbean coral reef structure and biodiversity - Comparing boosted regression tree & multiple regression approaches
29 May 2020 | Teaching Materials | Contributor(s):
By Eric Womack
Virginia Commonwealth University
Creating and comparing boosted regression tree models to multiple regression models.
A Tough Choice in Watershed Management
08 May 2020 | Teaching Materials | Contributor(s):
By Ann E Russell
Iowa State University
In this Team-based activity, students work in teams, playing the role of natural resource managers who must decide in which region to invest limited funding for nutrient reduction in streams....
Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
06 Jun 2019 | Teaching Materials | Contributor(s):
By Wendy Clement1, Kathleen Prudic2, Jeffrey Oliver3
1. The College of New Jersey 2. University of Arizona 3. University of Arizona Libraries
This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...
Developing quantitative skills for ecological data: the effects of climate warming on phenological variation and species interactions
21 Nov 2018 | Teaching Materials | Contributor(s):
By Jill Hamilton1, Zachary Tarble1
North Dakota State University
Students combine long-term observational data sets and experimental warming in an alpine meadow in Gothic, CO to test, evaluate, and interpret ecological data focusing on phenological variation and...
50 Years of Data Science
30 Oct 2018 | Teaching Materials | Contributor(s):
By David Donoho
This paper reviews some ingredients of the current “Data Science moment”, including recentcommentary about data science in the popular media, and about how/whether Data Science isreally different...
By Bodo Winter1, Sven Grawunder2
1. Department of Cognitive and Information Sciences, University of California, Merced 2. Department of Linguistics, Max Planck Institute for Evolutionary Anthropology
The dataset recorded properties of formal and informal speech registers in Korean.
Innovative Teaching Exchange: Asking Questions in Probability Class
By Queena N. Lee-Chua
Ateneo de Manila University
This is an article in MAA's Innovative Teaching Exchange that describes strategies to get students past thoughtless number crunching, guessing, and intuition when it comes to solving probability...
Statistics for Biologists
By Magdalena Skipper1, Ritu Dhand1, Helen Pearson1, Francesca Cesari1
There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late.
26 Oct 2018 | Teaching Materials | Contributor(s):
By Louise Mead1, Jim Smith2, Wendy Johnson, Michael James Wiser2, Robert T Pennock2, Amy Lark
1. BEACON Center for the Study of Evolution in Action 2. Michigan State University
Published Avida-Ed article
Avida-ED User Manual
By Diane Blackwood
Michigan State University
Basic User manual to use Avida-ED
25 Oct 2018 | Teaching Materials | Contributor(s):
By Katherine Poole
Information about the many different facial bones.
Breeding synchrony in colonial birds: from local stress to global harmony
By Volker Grimm, Roger Jovani1
Helmholtz Center for Environmental Research
This is a supplemental resource for ABM
The ODD protocol: A review and first update
By Volker Grimm, Uta Berger, Donald L. DeAngelis, J. Gary Polhill, Jarl Giske, Steven F. Railsback
The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).
Theory, models and biology
By Wenying Shou1, Carl T. Bergstrom2, Arup K. Chakraborty3, Frances K. Skinner4
1. Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States 2. Department of Biology, University of Washington, Seattle, United States 3. Departments of Chemical Engineering, Physics, Chemistry and Biological Engineering, and the Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, United States 4. Toronto Western Research Institute, University Health Network and the University of Toronto, Toronto, Canada
Theoretical ideas have a rich history in many areas of biology, and new theories and mathematical models have much to offer in the future.