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1. BSL-4: Authorized Personnel Only

   17 Aug 2020 | Teaching Materials | Contributor(s):

   By Nicole Anthony

   Biological Sciences, Toronto District School Board

   National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

   https://qubeshub.org/publications/795/?v=1

2. 

   Katherine Petrie

   https://qubeshub.org/community/members/17548

3. 

   Nai-Chun Lin

   https://qubeshub.org/community/members/17540

4. 

   Xiaobin Zheng

   https://qubeshub.org/community/members/17483

5. 

   Jeroen Gillard

   https://qubeshub.org/community/members/17392

6. 

   Rebecca Bortz

   https://qubeshub.org/community/members/17353

7. 

   Karthik Anantharaman

   https://qubeshub.org/community/members/17301

8. 

   Robin B Kodner

   https://qubeshub.org/community/members/17280

9. 

   Matthew Robbins

   https://qubeshub.org/community/members/17240

10. Module 2: Transcription Part I: From DNA Sequence to Transcription Unit

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Maria Santisteban¹, Alexa Sawa²

    1. University of North Carolina - Pembroke 2. College of the Desert

    This module illustrates how a primary transcript (pre-mRNA) is synthesized using a DNA molecule as the template. Students will learn about the importance of the 5' and 3' regions of the gene for...

    https://qubeshub.org/publications/1990/?v=1

11. Module 1: Introduction to the Genome Browser: What is a Gene?

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Joyce Stamm¹, Jennifer Kennell², Wilson Leung³, Leocadia Paliulis⁴, Srebrenka Robic⁵, Anne Rosenwald⁶

    1. University of Evansville 2. Vassar College 3. Washington University in St. Louis 4. Bucknell University 5. Agnes Scott College 6. Georgetown University

    This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

    https://qubeshub.org/publications/1989/?v=1

12. GEA Introductory lesson on RNA-Seq

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Jason Williams¹, Judy Brusslan², Ray Enke³, Matthew Escobar⁴, Vince Buonaccorsi⁵

    1. Cold Spring Harbor Laboratory 2. California State University Long Beach 3. James Madison University 4. California State University San Marcos 5. Juniata College

    This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

    https://qubeshub.org/publications/1988/?v=1

13. GEA Introductory lesson on BLAST

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Justin DiAngelo¹, Alexis Nagengast², Wilson Leung³, Douglas L Chalker³

    1. Penn State Berks 2. Widener University 3. Washington University in St. Louis

    The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...

    https://qubeshub.org/publications/1987/?v=1

14. Genome Solver: Building faculty skills in bioinformatics

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Vinayak Mathur¹, Gaurav Arora², Vinodh Ganesan³, Hita Gupta⁴, Mariana Kazarian⁵, Anne Rosenwald⁶

    1. Cabrini University 2. Gallaudet University 3. Temple University 4. Conestoga High School 5. Horace Mann School 6. Georgetown University

    Genome Solver (GS) began in 2011 as an NSF-funded project for faculty training in basic web-based bioinformatics skills.

    https://qubeshub.org/publications/1974/?v=1

15. Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit¹, Rachel Cook², Barbara Murdoch³, Elizabeth F Ryder⁴, William Tapprich⁵

    1. University of Dubuque 2. Fairmont State University 3. Eastern Connecticut State University 4. Worcester Polytechnic Institute 5. University of Nebraska-Omaha

    Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...

    https://qubeshub.org/publications/1975/?v=1

16. The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Barriers to Integration

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Elizabeth Dinsdale², William Morgan³, Mark A. Pauley⁴, William Tapprich⁵, Eric Triplett⁶, Jason Williams⁷

    1. Georgetown University 2. San Diego State University 3. The College of Wooster 4. University of Nebraska at Omaha 5. University of Nebraska-Omaha 6. University of Florida 7. Cold Spring Harbor Laboratory

    The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) seeks to promote the use of bioinformatics and data science as a way to teach biology.

    https://qubeshub.org/publications/1978/?v=1

17. Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life sciences education

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By William Morgan¹, Sam S Donovan², Hayley Orndorf², Sabrina Robertson³, Elizabeth F Ryder⁴, Michael Sierk⁵, Anne Rosenwald⁶, Elizabeth Dinsdale⁷, Eric Triplett⁸, Mark Pauley⁹, William Tapprich¹⁰

    1. The College of Wooster 2. University of Pittsburgh 3. NC State 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. National Science Foundation 10. University of Nebraska-Omaha

    To efficiently and effectively integrate bioinformatics instruction into undergraduate life science curricula, educators would benefit from open access, high-quality learning resources (LRs) for...

    https://qubeshub.org/publications/1979/?v=1

18. Making bioinformatics tools classroom-friendly

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Jason Williams, Wilson Leung¹, Cornel Ghiban²

    1. Washington University in St. Louis 2. Cold Spring Harbor Laboratory

    Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    https://qubeshub.org/publications/2000/?v=1

19. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    18 Jul 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Nicholas Lorusso²

    1. Kean University 2. Kean Univeristy

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=2

20. 

    Steven M Caruso

    https://qubeshub.org/community/members/16786