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Tags: Bioinformatics and Genomics

All Categories (1-20 of 46)

  1. Smeeta Shrestha

    https://qubeshub.org/community/members/18754

  2. Erika N Schwarz Taylor

    https://qubeshub.org/community/members/18320

  3. Steven Cresawn

    https://qubeshub.org/community/members/17513

  4. Damilola Olatunji

    https://qubeshub.org/community/members/17443

  5. Pre-lesson: Introduction to BLAST

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

    https://qubeshub.org/publications/1085/?v=2

  6. Lesson III - Annotation

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=3

  7. Rekha Meyer

    https://qubeshub.org/community/members/17211

  8. Emily Wiley

    https://qubeshub.org/community/members/16856

  9. Genome Sequence Data in R using Biostrings (Swirl Lesson)

    09 Jun 2020 | Teaching Materials | Contributor(s):

    By Robert E Furrow

    University of California, Davis

    By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

    https://qubeshub.org/publications/1898/?v=1

  10. Rodolfo Aramayo

    https://qubeshub.org/community/members/15670

  11. Jo Marie Bacusmo

    https://qubeshub.org/community/members/15264

  12. Exploring the evolution of caffeine biosynthesis enzymes

    22 Jan 2020 | Teaching Materials | Contributor(s):

    By Shuchismita Dutta

    RCSB Protein Data Bank, Rutgers University

    Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

    https://qubeshub.org/publications/1723/?v=1

  13. BLAST Exercises for Analyzing Cloning Results

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Erin R. Morris

    Baker University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

    https://qubeshub.org/publications/1734/?v=1

  14. Databases: A Study of Influenza

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

    https://qubeshub.org/publications/1642/?v=1

  15. Introduction to Genome Annotation

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    https://qubeshub.org/publications/1560/?v=1

  16. Lesson VI - The Community Science Project

    19 Nov 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

    https://qubeshub.org/publications/859/?v=2

  17. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

  18. Lesson V - Phylogenetics

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    https://qubeshub.org/publications/858/?v=2

  19. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/publications/857/?v=2

  20. Lesson III - Annotation

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=2