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A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
30 Aug 2021 | Teaching Materials | Contributor(s):
By Rachael M. St. Jacques †1, William M. Maza †1, Sabrina D. Robertson2, Andrew Lonsdale3, Caylin S. Murray1, Jason J. Williams4, Ray A. Enke*1
1. James Madison University 2. University of North Carolina Chapel Hill 3. University of Melbourne 4. Cold Spring Harbor Laboratory, DNA Learning Center
Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...
Introduction to UNIX command line
22 Jan 2020 | Teaching Materials | Contributor(s):
By Serghei Mangul1, Kristen Butela2, Michael Sierk3, Lihua Stefan
1. University of California - Los Angeles 2. University of Pittsburgh 3. Saint Vincent College
A laboratory module for an upper-level undergraduate biology course in which students will be able to carry out simple tasks using the Unix command-line environment.
A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
07 Jun 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
28 Feb 2019 | Teaching Materials | Contributor(s):
31 Jul 2018 | Teaching Materials | Contributor(s):
By Serghei Mangul
University of California - Los Angeles
These are materials for a Unix workshop with hands-on examples that requires no prior knowledge of Unix or programming.