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  1. Using an Interactive Game, Gutsy, to Examine the Impacts of Pathogens and Everyday Events on the Human Gut Microbiome

    29 Aug 2024 | Teaching Materials | Contributor(s):

    By Ania A. Majewska*1, Shannon J. Hostetter1

    University of Georgia

    The human gut microbiome is often associated with ‘good bacteria’ in marketing campaigns for dietary supplements, probiotic drinks, and fermented foods. Yet, the dynamic and complex...

    https://qubeshub.org/publications/4905/?v=1

  2. Bacteria to Brains in Backyard Coyotes: An Interdisciplinary Pedagogical Case Study

    13 Feb 2024 | Teaching Materials | Contributor(s):

    By Adam J. Kleinschmit*1, Andrea Bixler*2

    1. University of Dubuque 2. Clarke University

    Our interdisciplinary pedagogical case study explores the differences between rural and urban coyotes at the levels of organismal and community ecology. The focus is on how coyotes’ gut...

    https://qubeshub.org/publications/4617/?v=1

  3. Bacteria to Brains in Backyard Coyotes: An Interdisciplinary Pedagogical Case Study

    11 Feb 2024 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Andrea Bixler2

    1. Department of Natural and Applied Sciences, University of Dubuque, 2000 University Ave, Dubuque, IA 52001 2. Department of Science and Mathematics, Clarke University, 1550 Clarke Dr., Dubuque, IA 52001

    Our interdisciplinary pedagogical case study explores the differences between rural and urban coyotes at the levels of organismal and community ecology. The focus is on how coyotes’ gut microbiomes...

    https://qubeshub.org/publications/4345/?v=2

  4. Bacteria to Brains in Backyard Coyotes

    22 May 2023 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Andrea Bixler2

    1. Department of Natural and Applied Sciences, University of Dubuque, 2000 University Ave, Dubuque, IA 52001 2. Department of Science and Mathematics, Clarke University, 1550 Clarke Dr., Dubuque, IA 52001

    This interdisciplinary pedagogical case study focuses on differences between rural and urban coyotes at the levels of organismal and community ecology, including how their gut microbiomes could...

    https://qubeshub.org/publications/4345/?v=1

  5. Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses

    14 Oct 2022 | Teaching Materials | Contributor(s):

    By Anna J. Zelaya*1, Nicole M. Gerardo2, Lawrence S. Blumer3, Christopher W. Beck2

    1. California State University, San Bernardino 2. Emory University 3. Morehouse College

    Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many...

    https://qubeshub.org/publications/3527/?v=1

  6. Small Organisms with Big Consequences: Understanding the Microbial World Around Us

    25 Aug 2022 | Teaching Materials | Contributor(s):

    By William C. Beckerson*

    University of Louisville and University of Central Florida

    Creating a hands-on lab that conveys important information while simultaneously allowing for student autonomy can be difficult. This is particularly true for the field of microbiology, in which...

    https://qubeshub.org/publications/3458/?v=1

  7. The Impact of Diet and Antibiotics on the Gut Microbiome: Distance Education Variant

    30 Aug 2021 | Teaching Materials | Contributor(s):

    By Birgit M. Prüβ

    North Dakota State University

    The goal of this article is to describe a variation of an active learning exercise that was previously published by the same author under a similar title. The variation describes modifications...

    https://qubeshub.org/publications/2732/?v=1

  8. The impact of diet and antibiotics on the gut microbiome

    29 Aug 2021 | Teaching Materials | Contributor(s):

    By Birgit M. Prüβ*

    North Dakota State University

    The goal of this article is to describe an active learning exercise that can be used in a variety of advanced microbiology courses, including bacterial physiology, ecology, or systems biology. The...

    https://qubeshub.org/publications/2647/?v=1

  9. Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course

    27 Aug 2021 | Teaching Materials | Contributor(s):

    By Julia L. Stevens1, Riley DeHority2, Carlos Christopher Goller2

    1. North Carolina State University, North Carolina Museum of Natural Sciences 2. North Carolina State University

    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    https://qubeshub.org/publications/2585/?v=1

  10. You and Your Oral Microflora: Introducing non-biology majors to their “forgotten organ”

    22 Aug 2021 | Teaching Materials | Contributor(s):

    By Anna K. Strain1, Kieng B. Vang1

    University of Minnesota

    With limited time available for laboratory activities, introductory science courses for non-science majors typically use the laboratory period to reinforce material that was previously presented...

    https://qubeshub.org/publications/2514/?v=1

  11. Team microBIOME Fall 2020 - DIY microbiome analysis

    25 Nov 2020 | Teaching Materials | Contributor(s):

    By Davida Smyth1, Alice Tarun2, Christine Girtain3, Melanie Lenahan4, Maira Goytia, Khuanchivin Geena Sompanya5, Theodore Muth6

    1. Texas A&M San Antonio 2. Alfred State College 3. Toms River Regional School NJ 4. Raritan Valley Community College 5. CUNY 6. CUNY Brooklyn College

    This is our final team report for this year's BIOME Institute 2020. Learn about what we got up to and what we're planning for Spring 2021. If you want more information on REMNet go...

    https://qubeshub.org/publications/2148/?v=1

  12. Microbiomes forAll: The Research Experiences in Microbiomes Network

    21 Jul 2020 | Teaching Materials | Contributor(s):

    By Jessica Joyner1, Davida Smyth2, Avrom Caplan3, Theodore Muth4

    1. Georgia State University 2. Texas A&M San Antonio 3. Pace University 4. CUNY Brooklyn College

    Poster on REMNet presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    https://qubeshub.org/publications/1998/?v=1

  13. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/publications/1092/?v=2

  14. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/publications/1092/?v=1

  15. Geoscience Methods and Resources for K-5 Pre-Education Majors

    28 May 2018 | Teaching Materials | Contributor(s):

    By James Burton Deemy

    College of Coastal Georgia

    : Exploring Geoscience Methods was an excellent capstone experience for Elementary Education Majors. The class I used this module with was 24 students of various backgrounds and academic...

    https://qubeshub.org/publications/572/?v=1

  16. Maternal transmission of microbiome

    20 Feb 2018 | Teaching Materials | Contributor(s):

    By Tamar Goulet1, Sharon Maureen Homer-Drummond2

    1. University of Mississippi 2. Tri-County Technical College

    Understanding the cascading effects of the transfer of maternal microbiome during a vaginal birth (vs. a c-section) to the well-being of a newborn.

    https://qubeshub.org/publications/361/?v=1

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