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A Quick Guide to Teaching R Programming to Computational Biology Students
22 Oct 2018 | Teaching Materials | Contributor(s):
By Stephen Elgen
University of Cambridge
An introduction from an experienced educator in teaching R to computational biology graduate students.
https://qubeshub.org/publications/838/?v=1
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A Very Basic Tutorial for Performing Linear Mixed Effects Analyses: Tutorial 2
20 Oct 2018 | Teaching Materials | Contributor(s):
By Bodo Winter
University of California, Merced
The second of two tutorials that introduce you to linear and linear mixed models. This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models.
https://qubeshub.org/publications/833/?v=1
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An evolution curriculum designed around understanding the rise and spread of drug-resistant pathogens
07 Jun 2018 | Teaching Materials | Contributor(s):
By Aditi Pai1, Amanda Gibson2
1. Spelman College 2. Emory University
Poster on teaching concepts in evolution and data science skills in an upper level Biology elective at Spelman College presented at the 2018 QUBES/BioQUEST Summer Workshop
https://qubeshub.org/publications/609/?v=1
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An introduction to population matrix models: a swirl lesson
15 Jun 2020 | Teaching Materials | Contributor(s):
By Jennifer Apple
SUNY Geneseo
Students will learn how to set up a population matrix model in R and use it for demographic analysis of a population, including projecting population growth, determining lambda and the stable age...
https://qubeshub.org/publications/1926/?v=1
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An Introduction to the R Programming Environment
02 Jun 2021 | Teaching Materials | Contributor(s):
By K. A. Garrett1, P. D. Esker1, A. H. Sparks1
Kansas State University
An online module introducing students and biologists to R, published in American Phytopathological Society
https://qubeshub.org/publications/1002/?v=2
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An Introduction to the R Programming Environment
04 Jan 2019 | Teaching Materials | Contributor(s):
By K. A. Garrett1, P. D. Esker1, A. H. Sparks1
Kansas State University
An online module introducing students and biologists to R, published in American Phytopathological Society
https://qubeshub.org/publications/1002/?v=1
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BIO 181G: The information age
29 Oct 2018 | Teaching Materials | Contributor(s):
By Rachel Schwartz1, Linda Forrester1
University of Rhode Island
Course materials for BIO181G: The information age
https://qubeshub.org/publications/883/?v=1
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BIO 263 Ecological Data Analysis
29 Oct 2018 | Teaching Materials | Contributor(s):
By Rachel Schwartz1, Linda Forrester1
University of Rhode Island
Course materials for BIO 263 Ecological Data Analysis
https://qubeshub.org/publications/885/?v=1
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BIO 439/539: Big Data Analysis
29 Oct 2018 | Teaching Materials | Contributor(s):
By Rachel Schwartz1, Linda Forrester1
University of Rhode Island
Course materials for BIO 439/539: Big Data Analysis
https://qubeshub.org/publications/884/?v=1
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BIO103R: Bio 103 and 104 Labs in R at URI
29 Oct 2018 | Teaching Materials | Contributor(s):
By Rachel Schwartz1, Linda Forrester1
University of Rhode Island
GitHub repository for Bio 103 and 104 Labs in R at University of Rhode Island
https://qubeshub.org/publications/886/?v=1
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Calling Bull Case Study — 99.9% Caffeine-free with R
11 Nov 2020 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton1, Carl Bergstrom2, Jevin West2
1. Bates College and QUBES 2. University of Washington
This is an adaptation of Calling Bull's Case Study on how caffeine free is hot chocolate versus coffee in order to make it into a student project that uses R.
https://qubeshub.org/publications/2122/?v=1
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Calling Bullshit Bates College DCS 105 RByte Slides
29 May 2024 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton1, Sadie Kriegler
Unity College
This slide deck is a mix of in-class participation and coding activities which aims to formalize understanding of code.
https://qubeshub.org/publications/4808/?v=1
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Calling Bullshit DCS 105 Bates College Breakout Group Slides
29 May 2024 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton1, Sadie Kriegler
Unity College
This is a slide deck containing all breakout group slides for the course DCS 105 - Calling Bullshit at Bates College.
https://qubeshub.org/publications/4807/?v=1
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Calling Bullshit DCS 105 Bates College RByte Worksheets
29 May 2024 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton1, Sadie Kriegler
Unity College
These are handout worksheets for your in-class RByte activities.
https://qubeshub.org/publications/4822/?v=1
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Case Study - Storks vs Babies
11 Nov 2020 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton
Bates College and QUBES
This is a R project based on the Robert Matthews paper Storks vs Babies. The idea is to replicate the results of the paper, learn a bit about R for linear fits and graphing and explore correlation...
https://qubeshub.org/publications/2123/?v=1
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Case Study — World records as measures of senescence or randomness
12 Nov 2020 | Teaching Materials | Contributor(s):
By Carrie Diaz Eaton1, Carl Bergstrom2, Jevin West2
1. Bates College and QUBES 2. University of Washington
This is a project meant to accompany the Case Study that Carl Bergstrom, which uses R to explore whether declining track and field world record performance could be an artifact of sample size (less...
https://qubeshub.org/publications/2125/?v=1
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Cleaning Data with R and the Tidyverse in Swirl
09 Jun 2020 | Teaching Materials | Contributor(s):
By Rachel Hartnett
Mount St. Mary's University
The overall goal is to help students learn common data cleaning procedures on a dataset once they’ve collected measurements and before they are able to start their analysis. This swirl lesson is...
https://qubeshub.org/publications/1891/?v=1
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Coding Club: A Positive Peer-Learning Community
22 Apr 2020 | Teaching Materials | Contributor(s):
By Gergana Daskalova1, Sandra Angers-Blondin1, John Godlee1, Izzy Rich1, Beverly Tan1, Declan Valters1, Haydn Thomas1, Pedro Miranda1, Gabriela Hajduk1, Kat Keogan1, Isla Myers-Smith1, Kyle Dexter1, Christina Coakley1
University of Edinburgh
Free and self-paced tutorials and courses for learning to code out of the University of Edinburgh
https://qubeshub.org/publications/1816/?v=1
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Computational Biology using R
30 Oct 2018 | Teaching Materials | Contributor(s):
By Hong Qin
University of Tennessee Chattanooga
This is an introductory level course on computational biology.
https://qubeshub.org/publications/907/?v=1
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Cookbook for R
11 Sep 2018 | Teaching Materials | Contributor(s):
By Winston Chang
The goal of the cookbook is to provide solutions to common tasks and problems in analyzing data.
https://qubeshub.org/publications/780/?v=1