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Tags: simulation

All Categories (21-40 of 50)

  1. Luria-Delbruck

    14 Sep 2015 | | Contributor(s):: Tony Weisstein, John R Jungck, Doug Green

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/777These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses. Under the hypothesis of acquired immunity, mutation...

  2. Michaelis-Menten Enzyme Kinetics

    14 Sep 2015 | | Contributor(s):: Tony Weisstein

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/778In this simulation equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions. The equations are...

  3. Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes

    27 Sep 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).

    https://qubeshub.org/publications/1427/?v=1

  4. Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models

    26 Feb 2016 | | Contributor(s):: William Wimsatt, Jeff Schank

    This resource has been updated - find the current version here: https://qubeshub.org/publications/346Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

  5. Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models

    29 Jan 2018 | Teaching Materials | Contributor(s):

    By William Wimsatt1, Jeff Schank2

    1. University of Chicago 2. Indiana University

    Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

    https://qubeshub.org/publications/346/?v=1

  6. ModelSim Population Biology Unit

    18 May 2015 |

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/902This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology....

  7. ModelSim Population Biology Unit

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Uri Wilensky1, Paulo Blikstein2, Corey Brady3, David Figlio1, Pratim Sengupta4, Jason Bertsche1, Yu (Bryan) Guo1, Nathan Holbert1, Michael Novak1, Firat Soylu1, Aditi Wagh1, Gokul Krishnan4, Brogan Miller2, Shima Salehi2

    1. Northwestern University 2. Stanford University 3. Inquire Learning 4. Vanderbilt University

    This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology.

    https://qubeshub.org/publications/902/?v=1

  8. Nick Galt

    https://qubeshub.org/community/members/7728

  9. OpenIntro

    24 Jan 2015 |

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/889OpenIntro was started with one goal in mind: create a free and open-source introductory textbook. The mission of OpenIntro is to make educational products that...

  10. OpenIntro

    29 Oct 2018 | Teaching Materials | Contributor(s):

    By Divid Diez1, Chris Barr1, Mine Çetinkaya-Rundel2

    1. OpenIntro 2. Duke University

    OpenIntro was started with one goal in mind: create a free and open-source introductory textbook.

    https://qubeshub.org/publications/889/?v=1

  11. Pamela Pape-Lindstrom

    https://qubeshub.org/community/members/7788

  12. Population genetics simulation program

    Collections | 14 Apr 2015 | Posted by Alison N Hale

    https://qubeshub.org/community/groups/populus/collections/other-resources-shared-by-participants

  13. Population Growth

    30 Jan 2015 | | Contributor(s):: Miles Silman

    Lab exercise in which students model both discrete and continuous density-independent growth. Students also model discrete and time-lagged density-dependent growth. General questions are provided at the end.

  14. POPULUS Evolutionary forces

    03 Feb 2015 | | Contributor(s):: Jonathan M. Brown

    This lab is focused on understanding how evolutionary forces - including mutation, genetic drift, migration, and selection - result in changes in population allele frequencies.  

  15. POPULUS Genetic Drift Computer Simulation

    30 Jan 2015 | | Contributor(s):: Joanna Vondrasek, Janis Antonovics, Doug Taylor

    A stand-alone lab exercise developed for the Evolution course at the University of Virginia. Explores the effects of population size and initial allele frequency on the loss/fixation of alleles.  

  16. POPULUS Lotka - Volterra, the logistic equation & Isle Royale

    13 Feb 2015 | | Contributor(s):: Stephen Malcolm

    Laboratory exercise explores predator-prey dynamics using Populus.

  17. POPULUS Simulations of interspecific competition using the Lotka-Volterra model

    13 Feb 2015 | | Contributor(s):: Scott Creel

    Explores the Lotka-Volterra model of interspecific competition using Populus.  

  18. Populus: Simulations of Population Biology

    05 Oct 2015 | | Contributor(s):: D. N. Alstad

    This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...

  19. Populus: Simulations of Population Biology

    08 Feb 2018 | Teaching Materials | Contributor(s):

    By D. N. Alstad

    University of Minnesota

    Link to Populus Software

    https://qubeshub.org/publications/352/?v=1

  20. PPLANE

    02 Apr 2015 |

    PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).