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Using DNA Subway to Analyze Sequence Relationships

Author(s): Jason Williams1, Ray A. Enke2, Oliver Hyman2, Emily Lescak3, Sam S Donovan4, William Tapprich5, Elizabeth F Ryder6

1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute

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Adapt 2
Summary:
This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms

Version 2.0 - published on 30 May 2018 doi:10.25334/Q4J111 - cite this

Keywords

  1. phylogenetics
  2. NIBLSE
  3. DNA Barcoding
  4. DNA sequence
  5. BLAST
  6. multiple sequence alignment
  7. C1. Role of bioinformatics
  8. C2. Computational concepts
  9. C4. Bioinformatics tools
  10. C5. Data retrieval
  11. C8. Data types
  12. Incubated at NIBLSE

Alignments

    Contents:
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    Adaptations

    Intro to DNA Barcoding v 1.0.0
    Adapted by Hayley Orndorf
    Adapted from
    Diff
    Intro to DNA Subway Blue Line v 1.0.0
    Adapted by Hayley Orndorf
    Adapted from
    Diff
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