REMNet - A National Network for Integrating the Study of Microbiomes into Course-based Undergraduate Research Experiences (RCN-UBE Introduction)
Author(s): Theodore Muth1, Davida Smyth2, Avrom Caplan3
1. CUNY Brooklyn College (REMNet Team) 2. Texas A&M San Antonio 3. The City University of New York
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Description
Microbiomes play an important role in the function of many ecosystems in the environment and in human, plant, and animal health. Microbiomes can be studied through a combination of culture-dependent and -independent methods (i.e., metagenomics). Frequently microbiome studies generate enormous amounts of sequence data that can be difficult to analyze and study without specialized analysis pipelines. REMNet has worked to develop resources and provide training that allow faculty that do not have bioinformatics training to work with their students in collecting and analyzing data. Our support is intended to allow informative analyses without the need for coding skills or a formal training in DNA/RNA sequence analysis. We work primarily with faculty that focus on microbiology, ecology, general biology, genetics, environmental sciences, and other courses where bioinformatics are a tool, but not necessarily a primary learning objective.
Guides for conducting 16S amplicon sequencing with your students.
Ways to learn more:
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Muth, T. R., & Caplan, A. J. (2020). Microbiomes for all. Frontiers in Microbiology, 11, 593472.
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Resources including Journal Club, Tutorials, Webinars and Guides
Ways to get involved:
If you are interested in learning more and participating please join this group or email Theodore Muth.
Notes
Please visit our website for additional updates.
Cite this work
Researchers should cite this work as follows:
- Muth, T., Smyth, D., Caplan, A. (2023). REMNet - A National Network for Integrating the Study of Microbiomes into Course-based Undergraduate Research Experiences (RCN-UBE Introduction). RCN-UBE Community, QUBES Educational Resources. doi:10.25334/JX59-EQ90