You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19
    Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationR programming languagemicrobiomesCoastal wetlandsmanagementnortheastsea-level risesalt marshresearch in the classroomREMNeturban microbiomes

    1363

    views

    496

    downloads

    0

    comments

    0

    adaptations

    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

    1420

    views

    471

    downloads

    0

    comments

    0

    adaptations

    DCS 105 Calling Bull F24 Schedule
    Schedule overview for Bates College Course DCS 105 Calling Bull

    Keywords: datacalling bullmisinformationBates CollegeSchedule

    184

    views

    58

    downloads

    0

    comments

    0

    adaptations

    Module M.1 R basics for data exploration and management
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    870

    views

    526

    downloads

    0

    comments

    0

    adaptations

    Module M.5 Linear mixed-effects models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    525

    views

    211

    downloads

    0

    comments

    0

    adaptations

    Module M.8 Survival analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    423

    views

    164

    downloads

    0

    comments

    0

    adaptations

    Module M.6 Generalized linear models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    494

    views

    175

    downloads

    0

    comments

    0

    adaptations

    Module M.4 Simple linear regression analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    840

    views

    429

    downloads

    0

    comments

    0

    adaptations

    Module M.3 Visualizing data with ggplot2
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    456

    views

    241

    downloads

    0

    comments

    0

    adaptations

    Module M.2 Descriptive statistics
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    642

    views

    229

    downloads

    0

    comments

    0

    adaptations

    Genome Sequence Data in R using Biostrings (Swirl Lesson)
    By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

    Keywords: R programming languagecourse-based undergraduate research experienceBioinformatics and GenomicsCURECUREscourse-based research experiences (CUREs)STEM CUREsComparative genomicsBioconductor

    1327

    views

    1296

    downloads

    0

    comments

    0

    adaptations

    THE IMPORTANCE OF GREEN SPACES & NATIVE PLANTS TO URBAN AVIFAUNA: A Lesson on how urban residential yards can support birds during their annual cycle
    In this lesson students will learn about the impacts of urbanization, and the conservation challenges it poses to wildlife, in particular avifauna. Introductory ecology topics such as the theory of...

    Keywords: birdsurbanizationPoisson Distributionnative plantsGeneralized linear models

    666

    views

    497

    downloads

    0

    comments

    0

    adaptations

    Introduction to Primate Data Exploration and Linear Modeling with R
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology research students on data management and statistical...

    Keywords: R programming languageprimatespopulation ecology

    3012

    views

    262

    downloads

    0

    comments

    0

    adaptations

    Hardy-Weinberg Equilibrium: a swirl resource
    Students will use swirl to understand Hardy-Weinberg equilibrium. The lesson starts with observed numbers of individuals for each genotype, and students will work through a number of steps to...

    Keywords: Hardy-Weinbergpopulation geneticsEvolutionevolutionary ecologyR programming languageSwirl

    1987

    views

    993

    downloads

    0

    comments

    0

    adaptations

    Biodiversity Conservation in Agriculture
    Biodiversity is decreasing rapidly each year and agriculture is a large contributor. In order to minimize biodiversity loss, we must study how local and landscape management in agriculture impact...

    Keywords: conservationagricultureBiodiversitybiodiversity conservationagricultural conservation

    553

    views

    503

    downloads

    0

    comments

    0

    adaptations

    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...

    Keywords: statisticsR programming languagebioinformaticsNIBLSERNAseqgene expressionCourseSourcecomputer programming

    1969

    views

    525

    downloads

    0

    comments

    0

    adaptations

    Responses to Climate Change in California Chipmunks: Move, Adapt, or Die
    A series of three modules using data from natural history museum collections to examine responses to climate change in multiple chipmunk species. Elevation and morphological data, beginner skills...

    Keywords: statisticsmodelingmodulemorphologysummary statisticsmodulesclimate datamuseumsclimate changeundergraduate educationR programming languageprogrammingelevationnatural history museumsmammalssmall mammals community dynamicsmuseum collectionsVertebrate Morphologyopen educational resourceR programming environment

    1566

    views

    944

    downloads

    0

    comments

    0

    adaptations

    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

    1446

    views

    3152

    downloads

    0

    comments

    0

    adaptations

    Tree Biomass and Phenology
    This lesson centers around understanding the connection of tree biomass and phenology with climate change. It uses both swirl and LearnR lessons in the R programming language to help students make...
    667

    views

    358

    downloads

    0

    comments

    0

    adaptations

    Pennies to The Moon Data Byte Series
    This series of Rbyte activities explores the concept of debunking using Fermi Estimation, R, and ChatGPT.

    Keywords: RprogrammingOpen SourceOpen Sciencedata literacycalling bullProgramming practiceFermi EstimationChatGPTGoogle CoLab

    246

    views

    214

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search