You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Digital Atlas of Ancient Life | Exploring the Diversity and History of Fossil Life
    The Digital Atlas project include field guides to fossils (including a mobile app), an online paleontology textbook, and a collection of over 500 virtual 3D models of fossil specimens.

    Keywords: Evolutionbiologyidigbiopaleontologytaxonomynatural history collectionsgeologySPNHC2020

    1372

    views

    328

    downloads

    0

    comments

    0

    adaptations

    Build Multiomic and Visualization Skills in Bioscience Lecture
    This resource promotes inclusive learning by using all free platforms to extend the central dogma to an applied experience. Genomics is focused on with literature reviews that are performed to...

    Keywords: geneticsBiochemistryBiology and Biochemistry EduationProtein StructureBioinformatics and GenomicsFunctional GenomicstranscriptomicsproteomicsRNAseqClinical genomicsprotein structure modelingInclusive teaching3D protein structure /function analysisinclusive classrooms3D protein structuresinclusivegene

    1172

    views

    579

    downloads

    0

    comments

    0

    adaptations

    What’s the DEAL – The Digital Encyclopedia of Ancient Life and Digital Atlas Apps
    The Digital Encyclopedia of Ancient Life and Digital Atlas Apps -- identify fossils and explore diversity and history of life on earth.

    Keywords: phylogeneticsdigital resourcesfossilspaleontologyevolutionary biologytaxonomyeduappsnatural history collections3D modelsgeologyopen textbookdigitized natural history collectionsencyclopediaatlasCretaceous World TCNPaleo Niches TCNvirtual teaching collectionFossil field guide

    1544

    views

    586

    downloads

    0

    comments

    0

    adaptations

    3D breast cancer tissue reconstruction
    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    Keywords: graphingdata visualizationbreast cancerDCIShistogramscentroidsums of squares

    2292

    views

    1733

    downloads

    0

    comments

    0

    adaptations

    Molecular Basis of Sickle Cell Disease
    This multi part case on hemoglobin structure as it relates to oxygen binding and sickle cell disease focuses on utilizing bioinformatics and molecular visualization tools to learn about the sickle...

    Keywords: Hemoglobinmolecular visualization and analysisintroductory bioinformaticssickle cell diseasePDBMolecular Case Studyoxygen bindingmyoglobinmolecular literacy3D protein structuresstructural representations

    1836

    views

    2173

    downloads

    0

    comments

    0

    adaptations

    The Tactile Clade Race
    This adaptation of the Vertebrate Clade Race provides a tactile approach to introduce basic tree reading skills for evolutionary phylogenies. Using a Universal Design for Learning informed...

    Keywords: phylogeneticsevolutionary biologytree readingvertebratesaccessibility for students with disabilities or impairmentsvisual impairment

    857

    views

    559

    downloads

    0

    comments

    0

    adaptations

    Ecology/Environmental Biology Molecular Case Studies for Molecular CaseNet - YouTube
    Biome Institute 2021, Fall Working Group Summary Video

    Keywords: climate changebiofilmcoffeecoral bleachingMolecular structuremolecular visualizationMolecular Case Studycholera

    1026

    views

    293

    downloads

    0

    comments

    0

    adaptations

    Advanced Student Molecular Case Study Authorship Scaffolded Project and Rubric
    Instructions, assignment prompts, and a rubric for assessing advanced undergraduate authorship of molecular case studies
    813

    views

    1047

    downloads

    0

    comments

    0

    adaptations

    COVID-19: Molecular Basis of Infection-ADAPTATION
    This case was written in Spring 2020 during the COVID-19 pandemic. It focuses on understanding the structure and interaction of the SARS-Cov-2 viral spike protein that facilitates infection in...

    Keywords: infectionvaccinemolecular visualization and analysisCOVID19PDBSARS-CoVMolecular Case Study

    1296

    views

    1754

    downloads

    0

    comments

    0

    adaptations

    CRISPR Gene Editing: Designing the gRNA and Donor Template
    In this adaptation, students learn how CRISPR/Cas9 is used in bacterial immunity and gene editing. Students create both a gRNA target and a donor template to edit a gene. Mutations can be from the...

    Keywords: geneticseducationcell biologymolecular biologymutationStem cellsstructure-functionmolecular visualization and analysis3D protein structure /function analysisCRISPR/Cas9crisprDNA mutationPiwiPDBMolecular Case StudyPiwi Matters

    2591

    views

    811

    downloads

    0

    comments

    0

    adaptations

    Module M.7 Generalized linear mixed-effects models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    467

    views

    199

    downloads

    0

    comments

    0

    adaptations

    The Influence of Exotic Plant Invasion on Pollinator Abundance
    This lesson introduces two global change factors, natural habitat loss and exotic plant invasion, and analyzes how these stressors impact the biodiversity and abundance of pollinator species....

    Keywords: statisticsinvasion biologyecologyRStudioBiodiversityInvasive SpeciesPearson correlation coefficientgeneral linear modelsinvasive plantspollinatorsPopulation abundance

    933

    views

    523

    downloads

    0

    comments

    0

    adaptations

    Enzyme Kinetics: How Quickly Can Acetylcholinesterase Break Up Your Thoughts?
    This module contains exercises designed to help upper-level cell biology students understand the common graphical methods used to evaluate enzyme activity and to see the impact of inhibitors on...

    Keywords: cell biologyQuantitative reasoninginterdisciplinarylinear modelsInterpreting GraphsNIQBC2. Data and GraphsC4. mathematical modelsnonlinear models

    518

    views

    256

    downloads

    0

    comments

    0

    adaptations

    Module M.6 Generalized linear models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    486

    views

    172

    downloads

    0

    comments

    0

    adaptations

    Does Urbanization Favor Exotic Species?
    In this lesson, students will learn about the exotic European honeybee (Apis mellifera), and why they are considered an important pollinator. They will be prompted to think about the impacts of...

    Keywords: RStudiogeneral linear modelsAICurbanizationPoisson Distributionnative speciesHoneybeeexotic species

    544

    views

    779

    downloads

    0

    comments

    0

    adaptations

    Biodiversity Conservation in Agriculture
    Biodiversity is decreasing rapidly each year and agriculture is a large contributor. In order to minimize biodiversity loss, we must study how local and landscape management in agriculture impact...

    Keywords: conservationagricultureBiodiversitybiodiversity conservationagricultural conservation

    542

    views

    486

    downloads

    0

    comments

    0

    adaptations

    Caribbean coral reef structure and biodiversity - Comparing boosted regression tree & multiple regression approaches
    Creating and comparing boosted regression tree models to multiple regression models.
    1146

    views

    2027

    downloads

    0

    comments

    0

    adaptations

    Exploring the Lotka-Volterra Competition Model using Two Species of Parasitoid Wasps
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 2

    Keywords: population dynamicsResources @ ESA - TIEEspecies interactionscompetition models

    1654

    views

    215

    downloads

    0

    comments

    0

    adaptations

    An Introduction to Agent-Based Modeling in Biological Systems Using NetLogo: Workshop Manual
    An introduction to the basics of agent based models, stepping through the creation of a model of bacterial population growth in NetLogo. Aimed at undergrad and graduate students with little-to-no...
    960

    views

    209

    downloads

    0

    comments

    0

    adaptations

    Diseasebots
    This module explores the effects of host density on contact rates and transmission of pathogens or mutualist symbionts using a hands-on simulation, a computer agent-based model in NetLogo, and an...

    Keywords: NetLogoDisease ecologydensity dependenceSpreadsheethost-parasitemutualismOpen-inquiry group projectsmanipulative models (‘beanbag biology’)plotting

    2277

    views

    1617

    downloads

    0

    comments

    1

    adaptations

    Close

    Home

    Search