You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Save the Bees, Ditch the Plow: A lesson exploring how squash bee abundance is affected by varying levels of soil disturbance.
    The purpose of this lesson is to explore the effects that three varying degrees of soil disturbance has on the squash bee abundance that is observed. We will learn about the importance of...

    Keywords: beesmutualismpollinatorscommunity-based conservationno till farmingreduced tillage

    603

    views

    429

    downloads

    0

    comments

    0

    adaptations

    Modification of "Exploring the population dynamics of wintering bald eagles through long-term data" module
    This module is a modification of the Beckstead et al. module in TIEE Volume 7. It includes a meta-cognition based model and self reflection, no statistics, and is organized to be done in 1-2...

    Keywords: Resources @ ESA - TIEEcase studypopulation ecologyendangered speciesconservation biologymigration ecology

    1737

    views

    1302

    downloads

    0

    comments

    0

    adaptations

    BLAST Exercises for Analyzing Cloning Results
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1278

    views

    399

    downloads

    0

    comments

    0

    adaptations

    Effect of the Intestinal Protein Snakeskin on the Lifespan of Fruit Flies: A Kaplan-Meier Survival Analysissource Draft (1)
    In this activity, students perform the Kaplan-Meier survival analysis on raw data obtained from an experiment that explores the effect of overexpressing the Snakeskin (Ssk) protein on the lifespan...

    Keywords: graphingBiochemistryhypothesis testingcalculus and biologyapproximating areas under curvesqbccCellular and Molecular BiologyCreate graphsInterpret graphsSolving Equations and Inequalitiesinterpret tablesConcepts in Statisticsusing statisticschi-square analysissurvival analysis

    1464

    views

    198

    downloads

    0

    comments

    0

    adaptations

    An Introduction to Agent-Based Modeling in Biological Systems Using NetLogo: Workshop Manual
    An introduction to the basics of agent based models, stepping through the creation of a model of bacterial population growth in NetLogo. Aimed at undergrad and graduate students with little-to-no...
    960

    views

    209

    downloads

    0

    comments

    0

    adaptations

    Figure of the Week: Applied Statistics for Wildlife Research
    Students use their number sense to make observations and explain or guess at patterns shown, discussing at the start of a weekly computer lab. This slide deck focuses on figures related to concepts...

    Keywords: statisticsgraphsmath anxietyWildlife Biologymath attitudesInterpreting Graphssense of belongingfear of negative evaluation

    292

    views

    149

    downloads

    0

    comments

    0

    adaptations

    Data simulation and randomization tests
    A participatory live-coding lesson on simulating data and performing randomization tests on ecological data in R.
    1708

    views

    1558

    downloads

    0

    comments

    0

    adaptations

    Sample NetLogo Code of Bacterial Growth
    Each NetLogo file is a sequential version of the final bacterial growth model produced in the Bacterial Growth Tutorial. These are to be used as checks to one's understanding alongside the tutorial.
    1139

    views

    1879

    downloads

    0

    comments

    0

    adaptations

    Performing a Population Viability Analysis from Data Students Collect on a Local Plant
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 9

    Keywords: RResources @ ESA - TIEEmatrix model

    1144

    views

    175

    downloads

    0

    comments

    0

    adaptations

    Parasite Lifecycle Storybook: Nick the Tick
    Nick the Tick is story about parasite lifecycles suitable for use in university or K-12 settings. The story is about a newly hatched tick named Nick and his adventures as he attempts to find his...

    Keywords: parasiteslife cyclesscience illustrationStorybook

    367

    views

    201

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

    2845

    views

    2410

    downloads

    1

    comments

    0

    adaptations

    3D breast cancer tissue reconstruction
    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    Keywords: graphingdata visualizationbreast cancerDCIShistogramscentroidsums of squares

    2292

    views

    1733

    downloads

    0

    comments

    0

    adaptations

    Phenotypic plasticity and predation
    Students predict changes to tadpole morphology and coloration after considering characteristics of the predator species and the prey themselves then test their own hypotheses (typically with...

    Keywords: RExcelimage analysisgraphingt-testsfrequency histogramsdata visualizationANOVAhypothesis formulationpredator-prey interactionsphenotypic plasticity

    2915

    views

    1429

    downloads

    0

    comments

    0

    adaptations

    Modification to What do Trees Know about the Rain
    Use of the tree ring data vs. precipitation to discuss how trees respond to drought

    Keywords: discussionslecture slidesgraphsgroup-ldcfmn

    2017

    views

    586

    downloads

    0

    comments

    0

    adaptations

    Enzyme Kinetics: How Quickly Can Acetylcholinesterase Break Up Your Thoughts?
    This module contains exercises designed to help upper-level cell biology students understand the common graphical methods used to evaluate enzyme activity and to see the impact of inhibitors on...

    Keywords: cell biologyQuantitative reasoninginterdisciplinarylinear modelsInterpreting GraphsNIQBC2. Data and GraphsC4. mathematical modelsnonlinear models

    518

    views

    256

    downloads

    0

    comments

    0

    adaptations

    Grassy Narrows and Muskrat Falls Dam: Hypothesis Testing and t-Tests
    Students are introduced to concepts of hypothesis testing using elementary hypothesis tests, t-tests, and p-values as they compare a given fish population for methylmercury levels (using real and...

    Keywords: statisticsmathematicsbiostatisticsecologybiologygraphingp-valuest-testshypothesis testingin-class activityZoologymercury biogeochemistrybiostatistics - generalfish populationqbccBiogeochemical cyclesInterpret graphsSolving Equations and InequalitiesConcepts in StatisticsElementary Hypothesis TestingMethylmercurydamsBioaccumulationtraditional dietsmercurymercury poisoningnative peopleindigenous populationCanadahydroelectricexplaining statisticsusing statisticsMake probability calculations

    1941

    views

    1615

    downloads

    0

    comments

    3

    adaptations

    (Online) Figure of the Week: Skills for Interpreting Comparative Genomics Figures
    Students use their number sense to make observations and explain or guess at patterns shown, discussing in a weekly online Q&A forum.

    Keywords: graphsonline learningmath anxietyonline forummath attitudesResources @ BIOMAAPInterpreting Graphsdiscussion forumComparative genomics

    1536

    views

    918

    downloads

    0

    comments

    1

    adaptations

    Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data
    This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.

    Keywords: data managementSpreadsheetmetadata

    2565

    views

    932

    downloads

    0

    comments

    0

    adaptations

    Intro to BIOMAAP - Student Math Anxiety Overview
    This presentation is intended as a stand alone 45 minutes-1 hour presentation to give students general information on math anxiety and a few strategies to try on their own.

    Keywords: math attitudesResources @ BIOMAAP

    1220

    views

    324

    downloads

    0

    comments

    0

    adaptations

    A class activity on classification
    Within the sciences, we are often talking of phylogenetic classification; hominin and non-human primate phylogenetic trees are often introduced in a course in biological anthropology. Students are...

    Keywords: hands-onphylogeny and classification

    484

    views

    102

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search