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    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

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    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

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    Bioimage Informatics Activity
    Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes

    Keywords: geneticsResources @ HHMI - BioInteractivegenomicscancergenetic basis of diseasebiology of cells

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    GBIF Tutorial - BLUE Resource
    A user guide and video instructions for GBIF

    Keywords: Querying databasesdatabasedata in the classroombiodiversity informaticsbiodiversity collections

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    iDigBio Tutorial - BLUE Resource
    A user guide and video instructions for iDigBio

    Keywords: databasesQuerying databasesdata in the classroombiodiversity informaticsbiodiversity collections

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    Arctos Tutorial - BLUE Resource
    A user guide and video instructions for Arctos

    Keywords: databasesdata in the classroombiodiversity informaticsbiodiversity collections

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    Exploring Data with BISON
    A module to explore aggregated observation and collection information, through BISON, or Biodiversity Information Serving Our Nation (https://bison.usgs.gov), a tool for visualizing GBIF data.

    Keywords: Querying databasesdata in the classroombiodiversity informaticsnatural history collectionsGBIFBISON

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    Prairie Eco Services (Project EDDIE)
    As densely populated urban areas continue to expand, human activity is removing much-needed greenspaces from our communities; in turn, we are also removing critical buffers that are needed to...

    Keywords: Project EDDIEWater cycle

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    Cleaning Biodiversity Data: Excel
    Access and clean an open source polar bear dataset using Excel.

    Keywords: data in the classroombiodiversity informaticsData cleaning

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    Communicating with Data: Digital Data Resources
    Students access, clean, configure, and standardize a dataset and create a relevant and scientifically valid data visualization to communicate science.

    Keywords: data in the classroomdata visualizationdigital resourcesbiodiversity informaticsbiodiversity collections

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    An Introduction to Biodiversity Databases and Specimen Images
    In this module, students will be introduced to some biodiversity data resources and how to search for and download herbarium specimen images. They will be asked to think critically about the...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

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    Identifiers in Digital Natural History Collections
    This is a collection of resources focusing on GUIDs (Globally Unique Identifiers) on what they are, what role they play in digital natural history collections, and how to incorporate them in...

    Keywords: idigbioStudy guidedata managementnatural history collectionsBLUEdigitized natural history collectionsidentifiers

    427

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    280

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    Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio
    Access and clean an open source herbarium dataset using Excel or RStudio.

    Keywords: Exceldata in the classroomRStudiobiodiversity informaticsnatural history collectionsHerbariaData cleaning

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    Following the Data
    The video and exercise provides insight into how researchers are using digital data resources to investigate biodiversity in prairie fen wetlands.

    Keywords: data in the classroomprocess of sciencebiodiversity informatics

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    Using Digitized Collections-Based Data in Research: A Hands-On Crash Course in Ecological Niche Modeling
    Step-by-step, hands-on instruction on ways to access and download these specimen data, how to process climate layer data, and how to apply Maxent software to construct ecological niche models.

    Keywords: ecology labbiodiversity informaticsnatural history collectionsMicrosoft Excelbiodiversity collectionsRstatsecological niche modelingQGISENMToolsMaxent

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    Building Biodiversity Datasets for Invasive Species
    A module guiding students through the process of mapping biodiversity data and building a biodiversity dataset to study the spread and impacts of the invasive aquatic plant species, European...

    Keywords: Management Of Datanatural historyField researchconservation ecologyAquatic invasive speciesbiodiversity informatics

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    Data is the New Science - Modified and combined with Following the Data Module
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

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    Data is the New Science
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

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    NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey
    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    Keywords: RRStudioCommunity EcologyBioinformatics Educationbiodiversity informaticsNMDSfungiordination

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    Using Aquatic Macroinvertebrates in Stream Bioassessment
    Bioassessment is an evaluation of the biological condition of a waterbody using biological surveys and other direct measurements of resident living organisms. Aquatic macroinvertebrates are...

    Keywords: toleranceMacroinvertebratesRiver Field Studies Networkbioindicatorbioassessmentstream health

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