You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Pesticide-Driven Bee Mortality: An Introduction to Survival Analysis in R
    In this lesson, students will receive an introduction to survival analysis in R utilizing data on bee mortality caused by pesticide exposure. In their code, students will assess survivability,...

    Keywords: chi-squaredsurvivalbeespesticidesRoundupsurvival analysissurvival plotsherbicides

    1093

    views

    520

    downloads

    0

    comments

    0

    adaptations

    Leslie/Lefkovitch Matrix Models for Age or Stage-structured Populations
    This Excel workbook uses the Leslie matrix model for population projection of age-class structured populations, and also allows Lefkovitch matrix models for stage-class structured populations.

    Keywords: survivalpopulation ecologyfecundityLeslie matrixeigenvalueseigenvectorsLefkovitch matrixage-class structured populationsstage-class structured populationsreproductive value

    173

    views

    110

    downloads

    0

    comments

    0

    adaptations

    Tag You're It: A Lesson Investigating Study Design and Survival Analysis on an American Shad Tagging Study
    In this lesson, students will learn about the various mark-recapture and tagging methods that are used in various scientific disciplines and the information they can gather. Key elements of...

    Keywords: survival analysisAmerican ShadCox Proportional Hazards ModelStudy Design

    307

    views

    464

    downloads

    0

    comments

    0

    adaptations

    REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19
    Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationR programming languagemicrobiomesCoastal wetlandsmanagementnortheastsea-level risesalt marshresearch in the classroomREMNeturban microbiomes

    1358

    views

    493

    downloads

    0

    comments

    0

    adaptations

    Module M.8 Survival analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    418

    views

    159

    downloads

    0

    comments

    0

    adaptations

    Interpreting one-factor ANOVA in R with swirl
    Interpreting One-Factor Analysis of Variance (ANOVA)

    Keywords: biostatisticsR programming languageSwirl

    1415

    views

    413

    downloads

    0

    comments

    0

    adaptations

    Leaf litter and soil invertebrates
    The diversity of invertebrates occupying the leaf litter and organic layer of soil can be quantified to examine abiotic and biotic questions. This lab can be used as a starting point for a...
    1716

    views

    1510

    downloads

    0

    comments

    0

    adaptations

    Biological Cellular Automata Laboratory (BioCA Lab)
    This Excel module includes both linear cellular automata and 2D cellular automata. The original 3 rules for survival, death, and birth are implemented in this module, but users with some Excel...

    Keywords: cellular automata

    172

    views

    78

    downloads

    0

    comments

    0

    adaptations

    Effect of the Intestinal Protein Snakeskin on the Lifespan of Fruit Flies: A Kaplan-Meier Survival Analysissource Draft (1)
    In this activity, students perform the Kaplan-Meier survival analysis on raw data obtained from an experiment that explores the effect of overexpressing the Snakeskin (Ssk) protein on the lifespan...

    Keywords: graphingBiochemistryhypothesis testingcalculus and biologyapproximating areas under curvesqbccCellular and Molecular BiologyCreate graphsInterpret graphsSolving Equations and Inequalitiesinterpret tablesConcepts in Statisticsusing statisticschi-square analysissurvival analysis

    1477

    views

    200

    downloads

    0

    comments

    0

    adaptations

    Two-Species Model
    These two Excel worksheets simulate the population growth of two interacting species. In isolation, each species grows logistically, but interaction effects between species may limit or enhance...

    Keywords: population growthcompetition modelsLotka-Volterra

    142

    views

    52

    downloads

    0

    comments

    0

    adaptations

    Phylogeography Simulator
    This Excel workbook simulates the phylogeography of an asexually reproducing species.

    Keywords: Phylogeographymutation ratesAsexual reproductionspecies dispersal

    80

    views

    11

    downloads

    0

    comments

    0

    adaptations

    GeoPhyl
    This Excel workbook allows students to explore evolution over space and time using published data on the invasive plant Tamarix (salt cedar).

    Keywords: Invasive SpeciesTamarixsalt cedarpermutation testrandom geographic distribution

    108

    views

    44

    downloads

    0

    comments

    0

    adaptations

    Investigating human impacts on stream ecology: locally and nationally
    TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally? This is an adaptation of the module that includes statistical testing and links sections to a lab report...
    1068

    views

    287

    downloads

    0

    comments

    0

    adaptations

    Checking Normality in R with swirl
    How to use the "three-prong" approach to check for normality

    Keywords: biostatisticsR programming languageSwirl

    1233

    views

    495

    downloads

    0

    comments

    0

    adaptations

    SUMS4Bio - Video tutorials in math and stats for biology students
    Links to videos and pdf tutorials for core mathematical and statistical concepts used in biology

    Keywords: Probabilitystatisticsmathematicsvideoschi-squaredExcelBar Graphsline graphsScatter Plotsp-valuest-testsExponentsLogarithmsproportionsRatiosbinomialdata typessummary statisticsfrequency histogramsResources @ SUMS4BioPresentation

    1577

    views

    241

    downloads

    0

    comments

    0

    adaptations

    Investigating human impacts on Southeastern US stream ecology using R
    Adaptation of the "Investigating human impacts on stream ecology: Scaling up from Local to National with a focus on the Southeast" specifically to focus on self-paced R code instruction
    752

    views

    754

    downloads

    0

    comments

    0

    adaptations

    Temperature Balance Equation Activity
    Students learn about the temperature balance equation. They then conduct a thought experiment (with a worksheet) using the components of the equation to manage their heat balance for survival on a...

    Keywords: equationtemperatureheatevaporationconductionconvectionMetabolicRadiation

    287

    views

    128

    downloads

    0

    comments

    0

    adaptations

    Math Bench Probability and Statistics: Basic Rules of Probability
    MathBench resource covering the "Law of Or" and the "Law of And" and how to use them in an online setting

    Keywords: ProbabilityResources @ MathBenchonlinerule of orrule of and

    1046

    views

    166

    downloads

    0

    comments

    0

    adaptations

    Seed Dispersal in Tropical Forests
    In this activity, students use data from published studies to understand patterns of seed dispersal and apply these ideas to the design of a conservation area.

    Keywords: ecologyResources @ HHMI - BioInteractivecommunityplantsdiversityScientific Process

    1663

    views

    248

    downloads

    0

    comments

    4

    adaptations

    Choosing healthy data for healthy relationships: how to use 5-point summaries, box and whisker plots, and correlation to understand global health trends.
    This module utilizes a user-friendly database exploring data selection, box-and-whisker plot, and correlation analysis. It also guides students on how to make a poster of their data and conclusions.

    Keywords: Querying databasesgraphingRatiosdata typesstatistical learningcorrelationBox Plotsqbcchealth sciences education researchnutrition & food scienceUnderstanding ratesCreate graphsInterpret graphsinterpret tablesHealth ScienceConcepts in Statisticsexplaining statisticsusing statistics

    2631

    views

    1786

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search