You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Kinetics of a Highly Conserved Enzyme - Carbonic Anhydrase
    This module contains exercises designed to introduce students to graphical representation of biological data. Students will explore the fundamental principles of enzyme kinetics including...

    Keywords: Excelintroductory biologycell biologygraphingslopeQuantitative reasoningdata visualizationquantitative biologyinterdisciplaryquantitative skillscorrelationenzyme functionInterpreting GraphsMichaelis-Mentenenzyme kineticsEnzyme activityenzyme inhibitionLinear and nonlinear analysisNIQBC2. Data and GraphsC4. mathematical modelsenzyme-substrateNIQB Interdisciplinary Quantitative Reasoningcarbonic anhydrase

    137

    views

    242

    downloads

    0

    comments

    0

    adaptations

    Maria vs Malaria
    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria.

    Keywords: bioinformaticsmolecular visualizationstructure-functionuniprotProtein Data BankMolecular Case StudyMolecular CaseNet

    514

    views

    328

    downloads

    0

    comments

    1

    adaptations

    Maria vs Malaria - AR Adaptation
    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria. Students will be able to view selected molecular views from the...

    Keywords: bioinformaticsAugmented RealityLarge class sizemolecular visualizationstructure-functionuniprotProtein Data BankMolecular Case StudyMolecular CaseNet

    472

    views

    269

    downloads

    0

    comments

    0

    adaptations

    Michaelis-Menten Enzyme Kinetics
    In this simulation, equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions.

    Keywords: Michaelis-Mentenenzymesenzyme kinetics

    1608

    views

    362

    downloads

    0

    comments

    0

    adaptations

    Collaborative case writing and field testing with Molecular CaseNet brings together discipline specific expertise for innovative pedagogical tools in the classroom
    Molecular case studies (MCS) use an interesting story as a hook , followed by exploration of biochemistry of one or more molecules of interest.  They can be useful in teaching about macromolecule...
    1053

    views

    177

    downloads

    0

    comments

    0

    adaptations

    Nature’s Flying Machines: The Evolutionary Relationship of Avian Form & Function
    In this series of activities, birds will be used as the model organism. The modules examine the connections between body form and function over time by investigating the relationship between avian...

    Keywords: evolutionary ecologyCommunity Ecology

    1469

    views

    1729

    downloads

    0

    comments

    0

    adaptations

    Exploring the evolution of caffeine biosynthesis enzymes
    Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1743

    views

    565

    downloads

    0

    comments

    0

    adaptations

    Operon
    This Excel workbook models lac operon function in a partial diploid E. coli. The user chooses the bacterial genotype and the sugars present in the surrounding medium: the workbook then determines...

    Keywords: Lac OperonE. coli

    88

    views

    21

    downloads

    0

    comments

    0

    adaptations

    BSL-4: Authorized Personnel Only
    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    Keywords: infectious diseaseexperimental designbioinformaticsEbolaNIBLSECase It!PCRBLASTmultiple sequence alignmentPublished in National Center for Case Study Teaching in Sciencepolymerase chain reactionfebrile illnessvirusELISAenzyme linked immunosorbent assayfilovirusAfrica

    1648

    views

    240

    downloads

    0

    comments

    0

    adaptations

    Computational Biology using R
    This is an introductory level course on computational biology.

    Keywords: simulationmoduleRcourseprojectsolutions

    1679

    views

    516

    downloads

    0

    comments

    0

    adaptations

    Cystic Fibrosis Mechanism and Treatment
    This animation shows how mutations in an ion channel protein lead to the genetic disease cystic fibrosis. The animation also discusses how research on this protein has been used to develop...

    Keywords: Resources @ HHMI - BioInteractiveBiochemistrymacromoleculesGenetic diseaseCell Structure & Function

    1211

    views

    235

    downloads

    0

    comments

    0

    adaptations

    Quantifying Bacterial Growth in the Guts and Hemolymph of Fruit Flies: Mathematical Modeling and Data Interpolation/Extrapolation
    In this activity, students will analyze raw data obtained from an experiment that explores the effect of overexpressing the Ssk protein in order to strengthen the intestinal barrier and prevent...

    Keywords: graphingexponential growthlinear modelsqbccinterpolationConcepts in Statistics and Precalculus Understanding exponential rates and linear slopesExtrapolation

    2096

    views

    351

    downloads

    0

    comments

    0

    adaptations

    AVIDA exercise on the role of mutation in evolution
    A tested exercise at the college freshmen level using AVIDA-Ed to generate and test a hypothesis about the relationship between mutation rate and the probability of evolving a useful function in...
    1008

    views

    76

    downloads

    0

    comments

    0

    adaptations

    Transpiration
    In this lab, students will examine differences between C3 and C4 plants in their transpiration rates.

    Keywords: plant physiologybotanylaboratoryResource Type

    1400

    views

    334

    downloads

    0

    comments

    0

    adaptations

    Making “sense” out of surface area to volume relationships
    Using a multimodal approach, the non-linear aspect of the surface area to volume relationship is explored. Students use their their senses of taste and sight to determine how smaller cells and...

    Keywords: active learningintroductory biologycell biologyquantitative skillskinesthetic learningLDC2023

    437

    views

    412

    downloads

    0

    comments

    0

    adaptations

    CRISPR Gene Editing: Designing the gRNA and Donor Template
    In this adaptation, students learn how CRISPR/Cas9 is used in bacterial immunity and gene editing. Students create both a gRNA target and a donor template to edit a gene. Mutations can be from the...

    Keywords: geneticseducationcell biologymolecular biologymutationStem cellsstructure-functionmolecular visualization and analysis3D protein structure /function analysisCRISPR/Cas9crisprDNA mutationPiwiPDBMolecular Case StudyPiwi Matters

    2601

    views

    823

    downloads

    0

    comments

    0

    adaptations

    Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches
    In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic...

    Keywords: bioinformaticsNIBLSECourseSourceautosomehomologous chromosomeshomologous recombinationsex chromosomesex determinationsex reversal mutations

    1704

    views

    449

    downloads

    0

    comments

    0

    adaptations

    Disturbance and Succession an Active Learning Lecture
    Learning Objectives: Identify and understand examples of disturbance --- Provide examples of and know/understand the differences between primary and secondary succession --- Know how ecologists...

    Keywords: wildlifelandscape ecologydisturbanceintermediate disturbance hypothesisfiresuccessionsmokey bearlandscape managementchronosequenceprimary successionsecondary succession

    248

    views

    84

    downloads

    0

    comments

    0

    adaptations

    Island Biogeography
    This Excel workbook demonstrates the principles of the MacArthur-Wilson theory of Island Biogeography. It allows the user to define the mainland species pool, area of the island, and distance of...

    Keywords: Logarithmsspecies richnessIsland biogeographyExponential FunctionsMacArthur-Wilson Theorypower functions

    110

    views

    17

    downloads

    0

    comments

    0

    adaptations

    Case Study: Pollination of the Early Spider Orchid (Ophrys sphegodes) by the Solitary Bee (Andrena nigroaenea)
    The research uses natural history collection data to explore a potential phenological shift between an orchid that employs sexual deception and a solitary bee.

    Keywords: pollination biologyClimate change and phenologydigitized natural history collectionsPseudocopulation

    1419

    views

    976

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search