You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    An Introduction to Statistical Learning: with Applications in R
    This book provides an introduction to statistical learning methods and is aimed for upper level undergraduate students, masters students and Ph.D. students in the non-mathematical sciences.

    Keywords: linear regressiontextbookclassificationcourseclustering coefficientR programming languagestatistical learningmachine learninglogistic regressionresamplingmodel selectionGeneralized additive modelsdecision treesprincipal components analysisMOOCResources @ QUBES - Teaching & Reference

    3638

    views

    1713

    downloads

    0

    comments

    0

    adaptations

    Ocean Acidification: Predator-Prey Interactions of Intertidal Snails and Sea Stars
    This lesson discusses ocean acidification, its causes, and the potential dangers that it may pose to aquatic ecosystems by analyzing the relationship between intertidal invertebrates. While...

    Keywords: predator-prey interactionsocean acidification

    530

    views

    491

    downloads

    0

    comments

    0

    adaptations

    Linear Models and Linear Mixed Effects in R: Tutorial 1
    The first of two tutorials that introduce you to linear and linear mixed models.

    Keywords: statisticsmathematicsRdata analysisconceptsstatsregressionmixed modelslinear modelsfixed effectsResources @ QUBES - Teaching & Reference

    1719

    views

    325

    downloads

    0

    comments

    0

    adaptations

    Learning with All Your Senses: Mathematical Manipulatives Enhance Student Comprehension of Biological Models
    Handout for a session presentation on kinesthetic learning at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: Models3D models3D printingmanipulativeskinesthetic learning

    1230

    views

    296

    downloads

    0

    comments

    0

    adaptations

    Advancing population ecology with integral projection models: a practical guide
    Integral projection models (IPMs) use information on how an individual's state influences its vital rates – survival, growth and reproduction – to make population projections using regression...

    Keywords: IPMintegral projection modelspopulation growthreviewsdemographyelasticitylife historymatrix projection modelpopulation growth ratesensitivitystage structurevital ratesregressionResources @ QUBES - Teaching & Referencecovariatesanalytics

    983

    views

    204

    downloads

    0

    comments

    0

    adaptations

    Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models
    Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

    Keywords: modelingsimulationmoduleResources @ BioQUESTtextbookmodulesmathematical modeling

    2284

    views

    594

    downloads

    0

    comments

    0

    adaptations

    A Very Basic Tutorial for Performing Linear Mixed Effects Analyses: Tutorial 2
    The second of two tutorials that introduce you to linear and linear mixed models. This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models.

    Keywords: statisticsRdata analysisgraphingconceptsstatsregressionmixed modelslinear modelsfixed effectsrandom effectsintroductionResources @ QUBES - Teaching & Referencetechnologytutorial 2boot campbeginner

    2821

    views

    657

    downloads

    0

    comments

    0

    adaptations

    Data from: Advancing population ecology with integral projection models: a practical guide
    Review important resources for building IPMs and provide a comprehensive guide, with extensive R code, for their construction.

    Keywords: IPMintegral projection modelsdemographyelasticitylife historymatrix projection modelpopulation growth ratepopulation projection modelsensitivitystage structurevital ratesResources @ DryadResources @ QUBES - Data

    1095

    views

    180

    downloads

    0

    comments

    0

    adaptations

    IPMpack: an R package for Integral Projection Models
    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.

    Keywords: RR-Forgeanimalbiostatisticscomparative analysisecologylongitudinal datamodel comparisonmodel estimationprojectionssurvivaltime seriestrajectoryIPMintegral projection modelsResources @ QUBES - Software

    1508

    views

    424

    downloads

    0

    comments

    0

    adaptations

    Mentoring Undergraduate Research Projects in Mathematical Biology
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: epidemiologymentoringcurriculumundergraduate researchGene regulatory networkpest management

    1463

    views

    218

    downloads

    0

    comments

    0

    adaptations

    A Framework for Teaching Modeling to Biologists
    Abstract for presentation at SIAM ED 2016 on modeling

    Keywords: modelingSIAM

    1517

    views

    200

    downloads

    0

    comments

    0

    adaptations

    Self-Assembling Geometric Solids Videos
    An online resource showcasing research and developments in self-assembling 3D printed models. Our collection of videos covers various aspects of the self-assembly process and novel techniques.

    Keywords: GeometricSelf-assemblysolidsPlatonicArchimedean

    322

    views

    271

    downloads

    0

    comments

    0

    adaptations

    Visualizing your program for funding success: Logic & Theory of Change Models
    Session presentation on program evaluation at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: fundingevaluation2019 QUBES/BioQUEST Summer Workshoptheory of change

    1112

    views

    271

    downloads

    0

    comments

    0

    adaptations

    Circle Train Math Modeling Task
    This math modeling task is appropriate for high school Precalculus students. The students use their knowledge of transformations of trigonometric functions to create models for horizontal and...

    Keywords: mathematical modelTrigonometric Functionsparametric equationstransformations of functions

    1043

    views

    363

    downloads

    0

    comments

    0

    adaptations

    The ODD protocol: A review and first update
    The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).

    Keywords: agent-based modelabmstandardizationODD protocolModel descriptionModel formulationScientific communicationChapter 3model replic

    1031

    views

    544

    downloads

    0

    comments

    0

    adaptations

    An Introduction to agent-based modeling.
    Introductory level textbook based on a collection of lecture notes from an undergraduate course on agent-based modeling at Arizona State University.

    Keywords: textbookcurriculumNetLogoagent-based modelingIndividual & Agent Based Modelingcourseundergraduate educationResources @ QUBES - Teaching & Reference

    2112

    views

    250

    downloads

    1

    comments

    0

    adaptations

    Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE
    We introduce TRACE, a framework for documenting model testing and analysis. TRACE is based on the recently proposed framework of model "evaluation" , and is designed to make models fit for...

    Keywords: standardizationgood modelling practicerisk assessmentdecision supportTRACEResources @ QUBES - Teaching & Reference

    1043

    views

    227

    downloads

    0

    comments

    0

    adaptations

    Cell Collective: Learning biology with modeling and simulations
    Cell Collective is an online, research-grade modeling platform adapted to engage students in creating and simulating dynamic models of biological processes.

    Keywords: modelingsimulationSimulationsCell Collective

    1097

    views

    706

    downloads

    0

    comments

    0

    adaptations

    Digital Atlas of Ancient Life | Exploring the Diversity and History of Fossil Life
    The Digital Atlas project include field guides to fossils (including a mobile app), an online paleontology textbook, and a collection of over 500 virtual 3D models of fossil specimens.

    Keywords: Evolutionbiologyidigbiopaleontologytaxonomynatural history collectionsgeologySPNHC2020

    1354

    views

    318

    downloads

    0

    comments

    0

    adaptations

    Caribbean coral reef structure and biodiversity - Comparing boosted regression tree & multiple regression approaches
    Creating and comparing boosted regression tree models to multiple regression models.
    1130

    views

    1978

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search