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    Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
    Resource from the 2015 BioQUEST Summer Workshop
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    Robot vs. Disease: Using CellProfiler to model biomedical research in your classroom
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: image analysisCellProfilerfluorescence microscopymicroscopycellular analysis

    1627

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    CyVerse: Scalable Image Informatics
    Poster on cyberinfrastructure for the machine learning ere presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: image analysisundergraduate researchmachine learningCyVerse

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    Undergraduate Research Experiences in Computational Science at a Community College
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: computer simulationscomputational modelInterdisciplinary STEMcomputational toolscommunity colleges

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    A collaborative approach to quantitative biology course reform: It's better than doing it all by yourself
    This is the abstract of an oral presentation given at the Society for Mathematical Biology Annual Meeting in Atlanta, GA in 2015.

    Keywords: Society for Mathematical Biology

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    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

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    R for biologists
    An introductory guide to data analysis in R for life sciences researchers.

    Keywords: R

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    Statistical Exploration of Climate Data
    In this module the students will learn some basic concepts in statistical thinking about data, with emphasis on exploratory data analysis.

    Keywords: modulelinear regressioncase studyclimate datamoving averagesin-class activity

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    Teaching R with Swirl
    Session presentation on using Swirl, an interactive platform for learning and teaching R in the R console

    Keywords: Rdata analysisprogrammingSummer Workshop 2018Swirl

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    Data Analysis for the Life Sciences
    An online stats book written completely in R

    Keywords: Rbiostatisticsstatistical analysisR Markdown

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    Statistics for Biologists
    There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late.

    Keywords: statisticsdata analysisexperimental design

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    Learn Biological Sciences and Physics through scientific process, creation, experimentation and analysis
    Microbes remain attached and grow on various surfaces whether living or non-living. These surfaces provide differential growth substances for microbes to remain attached or grow. The differential...

    Keywords: data analysisscientific methodphysicshands-onScientific InquirymicrobesBiological SciencesSpectrophotometer

    864

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    Pesticide-Driven Bee Mortality: An Introduction to Survival Analysis in R
    In this lesson, students will receive an introduction to survival analysis in R utilizing data on bee mortality caused by pesticide exposure. In their code, students will assess survivability,...

    Keywords: chi-squaredsurvivalbeespesticidesRoundupsurvival analysissurvival plotsherbicides

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    Tag You're It: A Lesson Investigating Study Design and Survival Analysis on an American Shad Tagging Study
    In this lesson, students will learn about the various mark-recapture and tagging methods that are used in various scientific disciplines and the information they can gather. Key elements of...

    Keywords: survival analysisAmerican ShadCox Proportional Hazards ModelStudy Design

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    Tools: New tools for new science
    A collection of computational, modeling and data analysis tools developed at Microsoft Research Labs.

    Keywords: modelingdata analysisdatacomputational toolsdata visualization

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    Learn genomics and bioinformatics through scientific thinking, creation and analysis (virtual and hands-on)
    Nucleic acid are biological molecules composed of nitrogen-containing bases, phosphate groups, and sugar molecules. The complimentary chemical bonding results in formation of double stranded DNA....

    Keywords: data analysisbioinformaticsnucleotidesproteinsRNAgenomicsScientific communicationscientific writingDNAmodelling scientific thinkinggenescientific thinkingcreation

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    Literature Review: Inclusive Calculus for Life Sciences
    We believe that a biology-relevant calculus experience (biocalculus) can help overcome many of these issues in calculus. While challenging to build the capacity for teaching courses, students in...

    Keywords: calculusbiocalculusidentityInclusive teachingcalculus epistemology

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    REMNet - A National Network for Integrating the Study of Microbiomes into Course-based Undergraduate Research Experiences (RCN-UBE Introduction)
    The mission of REMNet’s “Microbiomes for All!” is to serve as a centralized hub for information and resources on the integration of microbiome studies into the undergraduate curriculum. RemNet...

    Keywords: RCN-UBE Introduction

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    Phylogeny of Land Plants
    In this lab, students review the characteristics of the major land plant lineages. Then they perform phylogenetic analyses based on morphological characters.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysis

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    Climate-Induced Shifts in California Butterflies
    A module in which students generate and test hypotheses about butterfly species’ response to climate change in the Central Valley and Sierra Nevada Mountains of northern California using publicly...

    Keywords: linear regressionScatter Plotsclimate changephenologyhypothesis formulationmountainsCaliforniapublic dataCODAP

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