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    Does Organelle Shape Matter?: Exploring Patterns in Cell Shape and Structure with High-Throughput (HT) Imaging
    Organelle structure has been studied and visualized for decades; however, publicly available databases that use improved high-throughput microscopy of gene-edited cell lines have recently...

    Keywords: modelingcase studymicroscopystructureOrganellesHigh-throughput (HT)Endoplasmic Reticulum (ER)Fluorescent microscopyHuman Cell Biology

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    2017-Anders_Kallen-Single species models in continuous time
    Part of a series of Lecture notes this lecture contains rich materials on logistic harvest models, spruce budworms, and chemostat.

    Keywords: chemostatlogisticharvestspruce budworm

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    2005-HP-Hirst-Using the Historical Development of Predator-Prey Models to Teach Mathematical Modeling
    Using the Historical Development of Predator-Prey Models to Teach Mathematical Modeling.

    Keywords: predator-preyhistory

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    Mentoring Undergraduate Research Projects in Mathematical Biology
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: epidemiologymentoringcurriculumundergraduate researchGene regulatory networkpest management

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    2015-Lorelei-Koss-Differential Equations In Art and Film
    This paper investigates how differential equations models have been used to study works in literature, poetry and film.

    Keywords: literatureartfilmpoetryreligionmythology

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    2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
    This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological...

    Keywords: epidemiologysensitivityImmunologyphysiologyRK-methodstime-lags

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    2000-Armson-Cockroft-Stone-Modelling a barnacle goose population
    This paper explores a number of models for the growth of a barnacle goose population. These geese spend their summers breeding in Spitsbergen and then winter in Caerlaverock on the Solway Firth....

    Keywords: population dynamicsexponentiallogistic equationBarnacle Geese

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    1986-Istvan_Gyori-Connections between compartment systems pipes and integro-differential equations
    In this paper we give the mathematical description of models in which the mass transport between compartments requires a given definite time or transit times are distributed according to given...

    Keywords: physiologypipelinecompartmentbloodcirculationintegro-differential equation

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    2009-Su-EtAl-Fitting Compartmental Models to Multiple Dose Pharmacokinetic Data using SAS
    In the case of a multiple dose study where subjects experience different dosing times, a superposition principle can be used to recursively account for each additional dose.

    Keywords: SASsuperpositionpharmacokineticscompartmental modelsmultiple dose

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    1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
    For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not...

    Keywords: sum of square errorsleast squarespharmacokineticslineteicscompartmental modelsdirect search

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    A Framework for Teaching Modeling to Biologists
    Abstract for presentation at SIAM ED 2016 on modeling

    Keywords: modelingSIAM

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    2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
    Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,

    Keywords: biologyMathematical Biologytextbooktext

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    DeFinetti 1.0
    This Excel workbook simulates evolution of a single gene with three alleles. The user assigns fitness values to each of the six possible genotypes, then enters starting allele frequencies for each...

    Keywords: population geneticsallelesevolutionary fitness

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    Gratitude Interventions in a Biology Course to Foster Student Persistence and Success
    College students are experiencing a mental health crisis, which has been further exacerbated by the COVID-19 pandemic. This is problematic because stress and anxiety impede learning. One way to...

    Keywords: mental healthgratitudepositive psychologydegree commitment

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    Ecology/Environmental Biology Molecular Case Studies for Molecular CaseNet - YouTube
    Biome Institute 2021, Fall Working Group Summary Video

    Keywords: climate changebiofilmcoffeecoral bleachingMolecular structuremolecular visualizationMolecular Case Studycholera

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    Advanced Student Molecular Case Study Authorship Scaffolded Project and Rubric
    Instructions, assignment prompts, and a rubric for assessing advanced undergraduate authorship of molecular case studies
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    Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
    This Practical Guide outlines a number of basic bioinformatics approaches that can be used to understand the molecular basis of genetic diseases.
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    Diversifying and Humanizing Scientist Role Models Through Interviews and Constructing Slide Decks on Researchers’ Research and Life Experiences
    To maintain recruitment and retention, biology teachers face the challenge of finding relatable role models for their students. Our ever-increasing scientific knowledge has been facilitated by...

    Keywords: researchdiversityinclusionScientific ProcessRepresentationScientistRole Models

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    1-104A-T-InfectionRisk-ModelingScenario
    This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions and comparing to actual...

    Keywords: regressioninfectionCOVID19carrying capacitylogistic equationexponential model

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    2018-Meredith_Greer-Ella_Livesay-Mathematical Epidemiology Goes to College
    In this article we present models that were inspired by two real-life outbreaks at a small residential college campus: H1N1 influenza in 2009 and, surprisingly, mumps in 2016.

    Keywords: epidemiologydiseaseH1N1Influenzaoutbreak

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