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    Biometeorology of Asthma in South Florida: From Statistical Analysis to Mathematical Modeling
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: data analysisdynamical systemsmathematical modelingsynchronizationasthmaimmune systemcomplex systemsfeedback loopsself-organized criticalitychaos

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    Thinking deeply about quantitative analysis: Building a Biologist's Toolkit
    Vision and Change in Undergraduate Biology Education encouraged faculty to focus on core concepts and competencies in undergraduate curriculum. We created a sophomore-level course, Biologists'...

    Keywords: Vision and ChangeRRStudioquantitative literacystatistical analysisScientific communication

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    Module M.5 Linear mixed-effects models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    Module M.1 R basics for data exploration and management
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    Module M.6 Generalized linear models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    Module M.3 Visualizing data with ggplot2
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    Module M.2 Descriptive statistics
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    Does Urbanization Favor Exotic Species?
    In this lesson, students will learn about the exotic European honeybee (Apis mellifera), and why they are considered an important pollinator. They will be prompted to think about the impacts of...

    Keywords: RStudiogeneral linear modelsAICurbanizationPoisson Distributionnative speciesHoneybeeexotic species

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    2010-Soetaert-EtAl-Solving Differential Equations in Rd SIMIODE Draft (5)
    Here we give a brief overview of differential equations that can now be solved by R.

    Keywords: solving

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    Water We Doing: A Deep Dive Into Sustainable Ocean Management & Blue Economies
    This lesson explores the concept of blue economies and includes a detailing lesson in R that involves basic statistics and building complex graphics.

    Keywords: linear regressionRStudioblue economy

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    Sequence Similarity: A Quick Introduction to Bioconductor
    Following the Sequence Similarity exercises by Kleinschmit, et al., this tutorial will guide students in using the Bioconductor suite of R packages to likewise compute sequence similarity.

    Keywords: bioinformaticssequencingNIBLSEmultiple sequence alignmentsequence similarityBLOSUM scoring matrixBioconductor

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    Setting Up Nonparametric Tests
    This swirl lesson will show you how to rearrange your data within R from one that shows a multiple factor design (2 x 2) to a single factor (4 levels) to allow for data analyses that require...
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    Ethics of Metabolic engineering
    This is an ethical reflection for students on an issue in metabolic engineering and the potential for "home-brew" morphine. The case study asks students to reflect on material in the linked...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Ethics in synthetic genomics
    This is an ethical reflection for students on an issue in genome engineering and the synthesis of potentially infectious viruses. The case study asks students to reflect on material in the linked...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Ethics of Gene Editing
    This is an ethical reflection for students on an issue in gene editing. The case study asks students to reflect on material in the two linked articles. Also included is the grading rubric.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Biobyte 4 - The role of data science principles and practices in undergraduate biology
    This short activity was an effort to launch a community conversation around the interface of data science principles and practices and undergraduate biology education. A variety of resources,...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Summer 2019 Biobytes
    This series includes the four Biobytes that were piloted at the 2019 BioQUEST / QUBES Summer Workshop titled, “Evolution of Data in the Classroom: From Data to Data Science”.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    A Very Basic Tutorial for Performing Linear Mixed Effects Analyses: Tutorial 2
    The second of two tutorials that introduce you to linear and linear mixed models. This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models.

    Keywords: statisticsRdata analysisgraphingconceptsstatsregressionmixed modelslinear modelsfixed effectsrandom effectsintroductionResources @ QUBES - Teaching & Referencetechnologytutorial 2boot campbeginner

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    Linear Regression (Excel) and Cellular Respiration for Biology, Chemistry and Mathematics
    Students typically find linear regression analysis of data sets in a biology classroom challenging. These activities could be used in a Biology, Chemistry, Mathematics, or Statistics course. The...

    Keywords: statisticsmathematicsdata analysisdatalinear regressionbiologyonlinegraphinglinear equationsQuantitative reasoningassessmentcollege algebracellstatistical analysisregressionOERAlgebrachemistryModelscorrelationSimple Linear RegressionMicrosoft Excellab activityexperimentCellular ProcessesATPqbccUsing Excelmanipulate equationsCellular and Molecular BiologyConcepts in Statisticsoxidationline of best fitexplaining statisticsusing statisticsCellular RespirationPredictionsRespirationgraphing in ExcelLinear CorrelationExothermic Reactioncreate scatter plotAdenosine Triphosphate (ATP)germinating peasPre-lab activityStudent activityHybridCollecting DataR-squareRegression ModelFunctionDependent VariablesIndependent VariablesLinear EquationLinear Equation in two variablescreate graphcreate equationcreate regressioncreate plotinterpret regressioninterpret data

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    Quantifying Bacterial Growth in the Guts and Hemolymph of Fruit Flies: Mathematical Modeling and Data Interpolation/Extrapolation
    In this activity, students will analyze raw data obtained from an experiment that explores the effect of overexpressing the Ssk protein in order to strengthen the intestinal barrier and prevent...

    Keywords: graphingexponential growthlinear modelsqbccinterpolationConcepts in Statistics and Precalculus Understanding exponential rates and linear slopesExtrapolation

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