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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Using Raw Sequence Data to Analyze Tumor Suppressor Mutations
    Learning to identify DNA sequence variants from raw sequencing data (electropherograms) is a basic molecular biology skill with applications to basic research and clinical practice. Yet learning to...

    Keywords: bioinformaticsmutationDNAgenomic visualizationparts of a geneclinical consequencesraw data

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    DataONE Module 02: Data Sharing
    Data sharing in the context of the data life cycle, the value of sharing data, concerns about sharing data, and methods and best practices for sharing data.

    Keywords: Data Discovery RCNmoduledatain-class activityHandoutproblem setdata managementDataONEPresentation

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    Chapter 3: Visualizing data
    Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language....

    Keywords: biostatisticsR programming language

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    A Multi-Institutional Alternative Assessment Faculty Learning Community: Supporting Teaching in Higher Education
    Faculty learning communities (FLCs) provide opportunities for professional development for faculty, teaching staff, and educational developers in a collaborative and open environment. In this...

    Keywords: professional developmentAlternative AssessmentFaculty Learning Community

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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Assignments and Projects
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy dataOur World in DataDear Data

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    REMNet Tutorial, Excel Part 1: Accessing Your Microbiome Data 5.3.19
    Video on accessing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: data analysisREMNet

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    Data Nuggets Resources
    Search Current Data Nuggets

    Keywords: DataNuggets

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    Data is the New Science - Modified and combined with Following the Data Module
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

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    Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes
    Technologies like next-generation sequencing, proteomics, and high-throughput phenotyping have transformed the way we do biology. There is a continued need for scientists with computational skills...

    Keywords: computationpythonJupyter notebookFunctionscentral dogmaDictionaries

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    Mice, Acorns, and Lyme Disease: a Case Study to Teach the Ecology of Emerging Infectious Diseases.
    Ebola, Zika, the recall of contaminated lettuce - these are just a few recent outbreaks making headlines. Students should be able to connect what they learn in their biology courses to explain...

    Keywords: epidemiologyEcological changeInfectious disease ecologyReservoirsTransmission cycle

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    What is Data Science - Introduction to Data Science
    Data Science is the technology that goes behind handling and working with data in the 21st century. Data Science concepts have proved to be the pinnacle in the last couple of years with the onset...
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    Data Science as a Superpower
    Presentation on data science education given at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Introducing Students to Data Science
    Presentation on data science at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: data science2019 QUBES/BioQUEST Summer Workshop

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    BIO 439/539: Big Data Analysis
    Course materials for BIO 439/539: Big Data Analysis

    Keywords: Rdata analysisbig datadata managementstatistical methods

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    1999-Lomen-Lovelock-Data Sets from text Differential Equations Graphics-Models-Data
    Data selected by field is presented, e.g., chemistry, electricity, growth, motion, population, miscellaneous.

    Keywords: dataEstimate

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    Serenity now! Keep calm and do science with real data in the classroom
    Presentation on a free web application currently under development on QUBES called Serenity at the 5th Life Discovery Conference

    Keywords: data sciencetool:serenity5th Life Discovery- Doing Science Education conference (LDC)5th Life Discovery Conference

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    Structuring Courses for Equity
    As instructors, we continually look for new ways to create equitable learning environments and support learning for all students in our courses. Recently, we have explored ways that we can increase...

    Keywords: Equitymetacognitioninclusivitycourse structure

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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Syllabus and Resources
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy data

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    More In Depth Spreadsheet Management Adaptation of Data Management using NEON Small Mammal Data
    This adaptation consists of three exercises that introduce students to 1) format spreadsheet data tables, 2) carry out spreadsheet quality control, and 3) count/sort/filter data of interest in...

    Keywords: data managementspreadsheetsmammalsCapture mark-recapture

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    NEON_PDSI
    Users access and manipulate drought data and visualize these data to learn about historical drought patterns.

    Keywords: Palmer Drought Severity Index

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