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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Colon Cancer: A Case of Genetic Bad Luck
    Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

    Keywords: bioinformaticsNCBINIBLSEBLASTPublished in National Center for Case Study Teaching in Sciencecolon cancerpedigreegenetic testingAPC

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    RIOS Working Group - Debunking the Myth that Race is Biological
    This RIOS Working Group grant funding compensated Raritan Valley Community College (RVCC) students for creating curricular materials that could be used to debunk the myth that race is biological....

    Keywords: geneticsbiology teachingraceOpen Pedagogyantiracismrios fundedRIOS Working Group

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    Biomes lecture with active learning activities and a worksheet set
    Learning Objectives: *Identify the characteristics of each biome *Know the major drivers of global climate patterns *Discern how 2 factors largely determine terrestrial biomes *Evaluate the...

    Keywords: lecture slidesgraphsglobal warmingclimatebiomesConvergent Evolution

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    Luria-Delbruck
    These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses.

    Keywords: ExcelphageResources @ ESTEEMLuria-Delbruckresistance

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    Module 6: Alternative Splicing
    This module explores how multiple different mRNAs and polypeptides can be encoded by the same gene. After completing this module students will be able to explain how alternative splicing of a gene...

    Keywords: geneticsdata visualizationmolecular biologygenomicsexonintronalternative splicingSimilarity searchesMessenger RNA

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    Using Data Science Skills and Digitized Natural History Collections Data to Investigate Ecological and Evolutionary Principles in Introductory Biology Courses
    Session presentation Biodiversity Literacy in Undergraduate Education project at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: data sciencenatural history collections2019 QUBES/BioQUEST Summer WorkshopBLUEdigitized natural history collections

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    Antibiotic Resistance Genes Detection in Environmental Samples
    Our aim is to provide an authentic research experience for undergraduate students in a variety of biology courses through collaboration between a four-year university and a community college. This...

    Keywords: geneticsenvironmentmicrobiologyUndergraduateantibiotic-resistancePCRgel electrophoresisauthentic inquiry

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    Strategies for developing a science communicator through authentic science writing assignments
    To prepare biology undergraduates to be able to read and evaluate the primary literature, it is beneficial to teach students how to write documents in the style of professional science style...

    Keywords: communicationPeer reviewscience writing

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    BIOME Avida ED Report video - YouTube
    Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
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    Avida-ED Experimental Evolution Project
    Outline to a research project based on Avida-ED's digital organisms
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    Exaggerated Traits and Breeding Success in Widowbirds
    Teaching Notes on the Exaggerated Traits and Breeding Success in Widowbirds

    Keywords: Evolutionexperimental designsexual dimorphismsexual selectionNatural SelectionWidowbirdsbirdintrasexual selectionintersexual selectionhandicap hypothesis

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    BIRDD Presentation at NABT November 2021
    This publication captures parts of the BIRDD workshop at NABT in November 2021. It contains the workshop slides and links to two hands-on BIRDD activities.

    Keywords: EvolutionGalapagos

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    A Hands-on Introduction to Hidden Markov Models
    In this Lesson, we describe a classroom activity that demonstrates how a Hidden Markov Model (HMM) is applied to predict a eukaryotic gene, focusing on predicting one exon-intron boundary. This HMM...

    Keywords: transcriptionexonintronsplicing

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    What is Speciation, How Does It Occur, and Why Is It Important for Conservation?
    Speciation provides a framework for classifying biodiversity on Earth and is a central concept in evolutionary biology. To help undergraduate students learn about speciation, we designed a...

    Keywords: EvolutionconservationGenetic DriftSpeciationNatural SelectionBiological species conceptgene flowMorphological species conceptPhylogenetic species concept

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

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    Visualizing your program for funding success: Logic & Theory of Change Models
    Session presentation on program evaluation at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: fundingevaluation2019 QUBES/BioQUEST Summer Workshoptheory of change

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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    Distributions CURE- Exploring Species Distribution Changes and their Drivers
    This course-based undergraduate research experience (CURE) uses digitized natural history collections data to answer questions about species distributions and their drivers. This inclusive CURE can...

    Keywords: Evolutionecologyidigbiodata management#iNaturalistcourse based undergraduate research experienceshuman impactsspecies distributionscourse-based research experiences (CUREs)digitized natural history collectionsGBIFQGISBCEENETgeoreferencing

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    How to Find a Gene: Retrieving Information From Gene Databases
    A strong understanding of distinct gene components and the ability to retrieve relevant information from gene databases are necessary to answer a diverse set of biological questions. However, often...

    Keywords: NCBItranscriptiontranslationGene StructureGene databasesEnsembl

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    Module 1: Introduction to the Genome Browser: What is a Gene?
    This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

    Keywords: geneticsbioinformaticsGenome BrowserSimilarity searchesExonsIntronsEvidence TrackStart CodonStop Codon

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