You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Luria-Delbruck
    These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses.

    Keywords: ExcelphageResources @ ESTEEMLuria-Delbruckresistance

    1208

    views

    225

    downloads

    2

    comments

    0

    adaptations

    Using Data Science Skills and Digitized Natural History Collections Data to Investigate Ecological and Evolutionary Principles in Introductory Biology Courses
    Session presentation Biodiversity Literacy in Undergraduate Education project at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: data sciencenatural history collections2019 QUBES/BioQUEST Summer WorkshopBLUEdigitized natural history collections

    1255

    views

    276

    downloads

    0

    comments

    0

    adaptations

    Antibiotic Resistance Genes Detection in Environmental Samples
    Our aim is to provide an authentic research experience for undergraduate students in a variety of biology courses through collaboration between a four-year university and a community college. This...

    Keywords: geneticsenvironmentmicrobiologyUndergraduateantibiotic-resistancePCRgel electrophoresisauthentic inquiry

    1985

    views

    408

    downloads

    0

    comments

    0

    adaptations

    Module 6: Alternative Splicing
    This module explores how multiple different mRNAs and polypeptides can be encoded by the same gene. After completing this module students will be able to explain how alternative splicing of a gene...

    Keywords: geneticsdata visualizationmolecular biologygenomicsexonintronalternative splicingSimilarity searchesMessenger RNA

    1136

    views

    2378

    downloads

    0

    comments

    0

    adaptations

    Strategies for developing a science communicator through authentic science writing assignments
    To prepare biology undergraduates to be able to read and evaluate the primary literature, it is beneficial to teach students how to write documents in the style of professional science style...

    Keywords: communicationPeer reviewscience writing

    845

    views

    168

    downloads

    0

    comments

    0

    adaptations

    BIOME Avida ED Report video - YouTube
    Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
    930

    views

    398

    downloads

    0

    comments

    0

    adaptations

    Avida-ED Experimental Evolution Project
    Outline to a research project based on Avida-ED's digital organisms
    864

    views

    740

    downloads

    0

    comments

    0

    adaptations

    Exaggerated Traits and Breeding Success in Widowbirds
    Teaching Notes on the Exaggerated Traits and Breeding Success in Widowbirds

    Keywords: Evolutionexperimental designsexual dimorphismsexual selectionNatural SelectionWidowbirdsbirdintrasexual selectionintersexual selectionhandicap hypothesis

    1145

    views

    2662

    downloads

    0

    comments

    0

    adaptations

    What is Speciation, How Does It Occur, and Why Is It Important for Conservation?
    Speciation provides a framework for classifying biodiversity on Earth and is a central concept in evolutionary biology. To help undergraduate students learn about speciation, we designed a...

    Keywords: EvolutionconservationGenetic DriftSpeciationNatural SelectionBiological species conceptgene flowMorphological species conceptPhylogenetic species concept

    3753

    views

    1098

    downloads

    0

    comments

    0

    adaptations

    BIRDD Presentation at NABT November 2021
    This publication captures parts of the BIRDD workshop at NABT in November 2021. It contains the workshop slides and links to two hands-on BIRDD activities.

    Keywords: EvolutionGalapagos

    684

    views

    717

    downloads

    0

    comments

    0

    adaptations

    A Hands-on Introduction to Hidden Markov Models
    In this Lesson, we describe a classroom activity that demonstrates how a Hidden Markov Model (HMM) is applied to predict a eukaryotic gene, focusing on predicting one exon-intron boundary. This HMM...

    Keywords: transcriptionexonintronsplicing

    2987

    views

    646

    downloads

    0

    comments

    0

    adaptations

    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

    1843

    views

    631

    downloads

    1

    comments

    0

    adaptations

    Distributions CURE- Exploring Species Distribution Changes and their Drivers
    This course-based undergraduate research experience (CURE) uses digitized natural history collections data to answer questions about species distributions and their drivers. This inclusive CURE can...

    Keywords: Evolutionecologyidigbiodata management#iNaturalistcourse based undergraduate research experienceshuman impactsspecies distributionscourse-based research experiences (CUREs)digitized natural history collectionsGBIFQGISBCEENETgeoreferencing

    2246

    views

    2034

    downloads

    0

    comments

    0

    adaptations

    Visualizing your program for funding success: Logic & Theory of Change Models
    Session presentation on program evaluation at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: fundingevaluation2019 QUBES/BioQUEST Summer Workshoptheory of change

    1045

    views

    246

    downloads

    0

    comments

    0

    adaptations

    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

    1382

    views

    284

    downloads

    0

    comments

    0

    adaptations

    How to Find a Gene: Retrieving Information From Gene Databases
    A strong understanding of distinct gene components and the ability to retrieve relevant information from gene databases are necessary to answer a diverse set of biological questions. However, often...

    Keywords: NCBItranscriptiontranslationGene StructureGene databasesEnsembl

    1392

    views

    332

    downloads

    0

    comments

    0

    adaptations

    ModelSim Population Biology Unit
    This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology.

    Keywords: modelingsimulationmoduleEvolutioncase studycurriculumagent-based modelpopulation modeldemonstrationin-class activityPresentation

    1181

    views

    209

    downloads

    0

    comments

    0

    adaptations

    Facilitating Scientific Literacy Through Writing: A Write-to-Learn Assignment for Large Introductory Undergraduate Biology Courses
    Write-to-learn (WTL) assignments have been used in a variety of disciplines to encourage conceptual learning and critical thinking in undergraduate education. These assignments focus on...

    Keywords: geneticsEvolutionecologyCellsPlants form and functionAnimals form and function

    1112

    views

    153

    downloads

    0

    comments

    0

    adaptations

    Altruism Simulation Activity
    An altruism activity that uses a NetLogo altruism simulation.

    Keywords: Evolutiontool:netlogoanimal behavioraltruism

    1533

    views

    722

    downloads

    0

    comments

    0

    adaptations

    Module 1: Introduction to the Genome Browser: What is a Gene?
    This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

    Keywords: geneticsbioinformaticsGenome BrowserSimilarity searchesExonsIntronsEvidence TrackStart CodonStop Codon

    1199

    views

    1993

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search